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\"false\", \"id\": \"83\", \"value\": \"Cell Differentiation\", \"conceptShape\": \"pentagon\", \"conceptTextBGcolor\": \"black\"} , \"group\": \"nodes\"} , { \"data\": { \"annotation\": \"\", \"conceptBorderColor\": \"black\", \"conceptType\": \"Protein\", \"pid\": \"OS01T0111600-01\", \"conceptSize\": \"26px\", \"displayValue\": \"OS01T0111600-01\", \"conceptTextBGopacity\": \"0\", \"conceptDisplay\": \"element\", \"conceptColor\": \"red\", \"conceptBorderStyle\": \"solid\", \"conceptBorderWidth\": \"1px\", \"flagged\": \"false\", \"id\": \"84\", \"value\": \"OS01T0111600-01\", \"conceptShape\": \"ellipse\", \"conceptTextBGcolor\": \"black\"} , \"group\": \"nodes\"} , { \"data\": { \"annotation\": \"\", \"conceptBorderColor\": \"black\", \"conceptType\": \"Molecular_Function\", \"pid\": \"GO: 0008429;GO: 0008429;GO_0008429;GO_0008429\", \"conceptSize\": \"18px\", \"displayValue\": \"Phosphatidylethanolamine Binding\", \"conceptTextBGopacity\": \"0\", \"conceptDisplay\": \"none\", 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\"pid\": \"TO_0000253\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"50\"} ], \"id\": \"33\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/...\", \"ofType\": \"Trait\", \"coaccessions\": [{ \"elementOf\": \"TO\", \"accession\": \"TO: 0000253\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0048316\", \"isPreferred\": \"false\"} , { \"name\": \"Seed Development\", \"isPreferred\": \"true\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"The process whose specific outcome is the progression of the seed over time,  from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms,  consisting of a protective coat enclosing an embryo and food reserves.\", \"pid\": \"GO: 0048316;GO: 0048316;GO_0048316;GO_0048316\", \"attributes\": [], \"id\": \"34\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Seed Development\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0048316\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"pre-harvest sprouting\", \"isPreferred\": \"false\"} , { \"name\": \"Seed Germination On Parent Plant\", \"isPreferred\": \"true\"} ], \"elementOf\": \"GO\", \"description\": \"The process in which a seed germinates before being shed from the parent plant.\", \"pid\": \"GO_0048623\", \"attributes\": [], \"id\": \"35\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Seed Germination On Parent Plant\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0048623\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Seed Germination\", \"isPreferred\": \"true\"} , { \"name\": \"GO: 0009845\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis.\", \"pid\": \"GO: 0009845;GO: 0009845;GO_0009845;GO_0009845\", \"attributes\": [], \"id\": \"36\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Seed Germination\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0009845\"} , { \"elementOf\": \"Wikipedia\", \"accession\": \"Germination#Seed_germination\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Seed Maturation\", \"isPreferred\": \"true\"} , { \"name\": \"GO: 0010431\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"A process in seed development that occurs after embryogenesis by which a quiescent state is established in a seed. Seed maturation is characterized by storage compound accumulation,  acquisition of desiccation tolerance,  growth arrest and the entry into a <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> period of variable length that is broken upon germination.\", \"pid\": \"GO: 0010431;GO: 0010431;GO_0010431;GO_0010431\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"50\"} ], \"id\": \"37\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Seed Maturation\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0010431\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"ABA signaling\", \"isPreferred\": \"false\"} , { \"name\": \"ABA signal transduction\", \"isPreferred\": \"false\"} , { \"name\": \"GO: 0009738\", \"isPreferred\": \"false\"} , { \"name\": \"abscisic acid mediated signalling\", \"isPreferred\": \"false\"} , { \"name\": \"Abscisic Acid-activated Signaling Pathway\", \"isPreferred\": \"true\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"The series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor,  and ending with modulation of a cellular process,  e.g. transcription.\", \"pid\": \"GO: 0009738;GO: 0009738;GO_0009738;GO_0009738\", \"attributes\": [], \"id\": \"38\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Abscisic Acid-activated Signaling Pathway\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0009738\"} ]} , { \"annotation\": \"[NUCLEOTIDE SEQUENCE]\", \"conames\": [{ \"name\": \"PMID: 21896881\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: UNIPROTKB\", \"description\": \"\", \"pid\": \"21896881\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"The Plant cell\"} , { \"attrname\": \"Chemical\", \"value\": \"[Plant Proteins]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2011\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"A wheat homolog of MOTHER OF FT AND TFL1 acts in the regulation of germination.\"} , { \"attrname\": \"Abstract\", \"value\": \"Seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> is an adaptive mechanism and an important agronomic trait. Temperature during seed development strongly affects seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in wheat (Triticum aestivum) with lower temperatures producing higher levels of seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. To identify genes important for seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>,  we used a wheat microarray to analyze gene expression in embryos from mature seeds grown at lower and higher temperatures. We found that a wheat homolog of MOTHER OF FT AND TFL1 (MFT) was upregulated after physiological maturity in dormant seeds grown at the lower temperature. In situ hybridization analysis indicated that MFT was exclusively expressed in the scutellum and coleorhiza. Mapping analysis showed that MFT on chromosome 3A (MFT-3A) colocalized with the seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> quantitative trait locus (QTL) QPhs.ocs-3A.1. MFT-3A expression levels in a dormant cultivar used for the detection of the QTL were higher after physiological maturity; this increased expression correlated with a single nucleotide polymorphism in the promoter region. In a complementation analysis,  high levels of MFT expression were correlated with a low germination index in T1 seeds. Furthermore,  precocious germination of isolated immature embryos was suppressed by transient introduction of MFT driven by the maize (Zea mays) ubiquitin promoter. Taken together,  these results suggest that MFT plays an important role in the regulation of germination in wheat. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Promoter Regions,  Genetic,  Temperature,  Seeds,  Oligonucleotide Array Sequence Analysis,  Germination,  Plant <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span>,  Molecular Sequence Data,  Chromosome Mapping,  Phylogeny,  Genetic Complementation Test,  Triticum,  Gene Expression Regulation,  Developmental,  Gene Expression Regulation,  Plant,  Plant Proteins,  Polymorphism,  Single Nucleotide,  Quantitative Trait Loci]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Shingo Nakamura,  Fumitaka Abe,  Hiroyuki Kawahigashi,  Kou Nakazono,  Akemi Tagiri,  Takashi Matsumoto,  Shigeko Utsugi,  Taiichi Ogawa,  Hirokazu Handa,  Hiroki Ishida,  Masahiko Mori,  Kanako Kawaura,  Yasunari Ogihara,  Hideho Miura]\"} , { \"attrname\": \"PUB_TYPE\", \"value\": \"[NUCLEOTIDE SEQUENCE]\"} ], \"id\": \"39\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 21896881\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"21896881\"} , { \"elementOf\": \"DOI\", \"accession\": \"10.1105\\/TPC.111.088492\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 34911435\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"34911435\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"BMC genomics\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2021\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Mapping pre-harvest sprouting resistance loci in AAC Innova  AAC Tenacious spring wheat population.\"} , { \"attrname\": \"Abstract\", \"value\": \"Pre-harvest sprouting (PHS) is a major problem for wheat production due to its direct detrimental effects on wheat yield,  end-use quality and seed viability. Annually,  PHS is estimated to cause  1.0 billion USD in losses worldwide. Therefore,  identifying PHS resistance quantitative trait loci (QTLs) is crucial to aid molecular breeding efforts to minimize losses. Thus,  a doubled haploid mapping population derived from a cross between white-grained PHS susceptible cv AAC Innova and red-grained resistant cv AAC Tenacious was screened for PHS resistance in four environments and utilized for QTL mapping. Twenty-one PHS resistance QTLs,  including seven major loci (on chromosomes 1A,  2B,  3A,  3B,  3D,  and 7D),  each explaining ≥10% phenotypic variation for PHS resistance,  were identified. In every environment,  at least one major QTL was identified. PHS resistance at most of these loci was contributed by AAC Tenacious except at two loci on chromosomes 3D and 7D where it was contributed by AAC Innova. Thirteen of the total twenty-one identified loci were located to chromosome positions where at least one QTL have been previously identified in other wheat genotype(s). The remaining eight QTLs are new which have been identified for the first time in this study. Pedigree analysis traced several known donors of PHS resistance in AAC Tenacious genealogy. Comparative analyses of the genetic intervals of identified QTLs with that of already identified and cloned PHS resistance gene intervals using IWGSC RefSeq v2.0 identified MFT-A1b (in QTL interval QPhs.lrdc-3A.1) and AGO802A (in QTL interval QPhs.lrdc-3A.2) on chromosome 3A,  MFT-3B-1 (in QTL interval QPhs.lrdc-3B.1) on chromosome 3B,  and AGO802D,  HUB1,  TaVp1-D1 (in QTL interval QPhs.lrdc-3D.1) and TaMyb10-D1 (in QTL interval QPhs.lrdc-3D.2) on chromosome 3D. These candidate genes are involved in embryo- and seed coat-imposed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> as well as in epigenetic control of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. Our results revealed the complex PHS resistance genetics of AAC Tenacious and AAC Innova. AAC Tenacious possesses a great reservoir of important PHS resistance QTLs\\/genes supposed to be derived from different resources. The tracing of pedigrees of AAC Tenacious and other sources complements the validation of QTL analysis results. Finally,  comparing our results with previous PHS studies in wheat,  we have confirmed the position of several major PHS resistance QTLs and candidate genes. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Triticum,  Plant Dormancy,  Genotype,  Chromosome Mapping,  Quantitative Trait Loci]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Raman Dhariwal,  Colin W Hiebert,  Mark E Sorrells,  Dean Spaner,  Robert J Graf,  Jaswinder Singh,  Harpinder S Randhawa]\"} ], \"id\": \"40\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 34911435\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"34911435\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 35971881\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"35971881\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"The plant genome\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2022\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"TAMFT-3A and TAMFT-3B2 homeologs are associated with wheat preharvest sprouting.\"} , { \"attrname\": \"Abstract\", \"value\": \"The phenomenon of preharvest sprouting (PHS),  caused by rain after physiological maturity and prior to harvest,  negatively affects wheat (Triticum aestivum L.) production and end use. Investigating the genetics that control PHS resistance may result in increased control of seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. Multiple genes involved in the development of seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> are associated with PHS. In this study,  the TaMFT (3A,  3B1,  3B2,  3D),  TaMKK3-4A,  and TaVP1-3B genes were assessed for association with PHS in a double-haploid line (DHL) hard red winter wheat population derived from a BC1 cross between the cultivars Loma and Warhorse,  where Loma was the recurrent and PHS susceptible parent. The 162 BC1 DHL lines were grown over two field seasons and PHS susceptibility was assessed by measuring PHS resistance in physiologically mature heads. The PHS variation was associated with the TaMFT-A and the B2 homeolog with Loma carrying mutant forms of each gene. No sequence variation between Loma and Warhorse was detected in the exons of the TaMFT-B1 and D homeologs. No association between PHS resistance and TaMKK3-4A or TaVp1-3B variation was observed,  though Loma and Warhorse vary for TaMKK3-4A and TaVp1-3B mutations reported to be PHS associated. Previous research has shown TaMFT-3A as having a large impact on PHS resistance. In the current study,  the TaMFT-3A and TaMFT-3B2 alleles each explained 14% of observed PHS variation. Markers for both TaMFT-3A and TaMFT-3B2 should be used in selecting for increased wheat <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> and PHS resistance. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Triticum,  Germination,  Alleles,  Mutation]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Justin Michael Vetch,  Brandon J Tillett,  Philip Bruckner,  John M Martin,  Karol Marlowe,  Marcus Alan Hooker,  Deven Robert See,  Michael J Giroux]\"} ], \"id\": \"41\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 35971881\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"35971881\"} ]} , { \"annotation\": \"[NUCLEOTIDE SEQUENCE]\", \"conames\": [{ \"name\": \"PMID: 24069187\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: UNIPROTKB\", \"description\": \"\", \"pid\": \"24069187\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"PloS one\"} , { \"attrname\": \"Chemical\", \"value\": \"[Plant Proteins]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2013\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.\"} , { \"attrname\": \"Abstract\", \"value\": \"The ability of seed to germinate under favorable environmental conditions is critical for seedling emergence,  plant establishment,  subsequent development and growth of adult plants,  and it is controlled by internal genetic factors and external environmental factors. Winter wheat in the southern Great Plains is often planted six weeks before the optimal planting date to produce more biomass for cattle grazing during the winter season. A high seed germination rate in this higher soil temperature environment is required for this specific management system. In this study,  a major QTL for temperature-sensitive germination was mapped on the short arm of chromosome 3A (QTsg.osu-3A) in a RIL population generated from two winter wheat cultivars. Furthermore,  TaMFT-A1,  previously reported to regulate seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A. However,  allelic variation in TaMFT-A1 between the two winter wheat cultivars differed from that was observed in spring wheat cultivars. There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars. The Jagger TaMFT-A1 allele is a novel haplotype and appears extensively in winter wheat cultivars. TaMFT-A1 transcript levels were up-regulated by high temperature but down-regulated by low temperature or seed storage time. These findings suggest that TaMFT-A1 may invoke different mechanisms for controlling seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>\\/germination among winter wheat cultivars. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Temperature,  Triticum,  Germination,  Plant Proteins,  Seasons]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Lei Lei,  Xinkai Zhu,  Shuwen Wang,  Meirong Zhu,  Brett F Carver,  Liuling Yan]\"} , { \"attrname\": \"PUB_TYPE\", \"value\": \"[NUCLEOTIDE SEQUENCE]\"} ], \"id\": \"42\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 24069187\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"24069187\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 33362967\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"33362967\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"PeerJ\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2020\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Genome-wide member identification,  phylogeny and expression analysis of PEBP gene family in wheat and its progenitors.\"} , { \"attrname\": \"Abstract\", \"value\": \"The phosphatidylethanolamine binding protein (PEBP) family comprises ancient proteins found throughout the biosphere that play an important role in plant growth and development,  flowering,  seed development and <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. However,  not all PEBP genes have been identified or analyzed in common wheat (Triticum aestivum L.) and its progenitors. In this study,  we identified the PEBP genes in common wheat,  Triticum dicoccoides,  Triticum urartu and Aegilops tauschii by searching whole genome sequences,  and characterized these genes by phylogenetic and transcriptome analyses. A total of 76,  38,  16 and 22 PEBP genes were identified in common wheat,  T. dicoccoides,  T. urartu and Ae. tauschii,  respectively. Phylogenetic analysis classified the PEBP genes into four subfamilies (PEBP-like,  MFT-like,  TFL-like and FT-like); the PEBP-like subfamily was identified as a new subfamily with genes in this subfamily were conserved in plants. Group 2,  3 and 5 chromosomes of common wheat and its progenitors contained more PEBP genes than other chromosomes. The PEBP genes were conserved in wheat during evolution,  and tandem duplication played a more important role in the amplification of PEBP genes than segmental duplication. Furthermore,  transcriptome analysis revealed that PEBP genes showed tissue\\/organ-specific expression profiles and some PEBP genes were induced to express by biotic stresses. Quantitative real-time PCR (qRT-PCR) analysis revealed that seven randomly selected PEBP genes expressed differently during seed germination under cold,  drought,  flood,  heat and salt stress treatments,  and five of these genes (TaPEBP1,  TaPEBP5,  TaPEBP9,  TaPEBP66 and TaPEBP69) showed significantly higher expression under different stress treatments,  indicating that these genes play important roles during seed germination under stress conditions. \"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Lei Dong,  Yue Lu,  Shubing Liu]\"} ], \"id\": \"43\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 33362967\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"33362967\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 27162497\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"27162497\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Breeding science\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2016\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Detection of QTLs for traits associated with pre-harvest sprouting resistance in bread wheat (Triticum aestivum L.).\"} , { \"attrname\": \"Abstract\", \"value\": \"Pre-harvest sprouting (PHS) is one of the serious problems for wheat production,  especially in rainy regions. Although seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> is the most critical trait for PHS resistance,  the control of heading time should also be considered to prevent seed maturation during unfavorable conditions. In addition,  awning is known to enhance water absorption by the spike,  causing PHS. In this study,  we conducted QTL analysis for three PHS resistant related traits,  seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>,  heading time and awn length,  by using recombinant inbred lines from 'Zenkouji-komugi' (high PHS resistance)  'Chinese Spring' (weak PHS resistance). QTLs for seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A. In addition,  the accumulation of the QTLs and their epistatic interactions contributed significantly to a higher level of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. QDor-4A is co-located with the Hooded locus for awn development. Furthermore,  an effective QTL,  which confers early heading by the Zenkouji-komugi allele,  was detected on the short arm of chromosome 7B,  where the Vrn-B3 locus is located. Understanding the genetic architecture of traits associated with PHS resistance will facilitate the marker assisted selection to breed new varieties with higher PHS resistance. \"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Liangzi Cao,  Kazuki Hayashi,  Mayumi Tokui,  Masahiko Mori,  Hideho Miura,  Kazumitsu Onishi]\"} ], \"id\": \"44\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 27162497\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"27162497\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 25931984\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"25931984\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Breeding science\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2015\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Molecular and genealogical analysis of grain <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in Japanese wheat varieties,  with specific focus on MOTHER OF FT AND TFL1 on chromosome 3A.\"} , { \"attrname\": \"Abstract\", \"value\": \"In the wheat (Triticum aestivum L.) cultivar 'Zenkoujikomugi',  a single nucleotide polymorphism (SNP) in the promoter of MOTHER OF FT AND TFL1 on chromosome 3A (MFT-3A) causes an increase in the level of gene expression,  resulting in strong grain <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. We used a DNA marker to detect the 'Zenkoujikomugi'-type (Zen-type) SNP and examined the genotype of MFT-3A in Japanese wheat varieties,  and we found that 169 of 324 varieties carry the Zen-type SNP. In Japanese commercial varieties,  the frequency of the Zen-type SNP was remarkably high in the southern part of Japan,  but low in the northern part. To examine the relationship between MFT-3A genotype and grain <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>,  we performed a germination assay in three wheat-growing seasons. On average,  the varieties carrying the Zen-type SNP showed stronger grain <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> than the varieties carrying the non-Zen-type SNP. Among commercial cultivars,  'Iwainodaichi' (Kyushu),  'Junreikomugi' (Kinki-Chugoku-Shikoku),  'Kinuhime' (Kanto-Tokai),  'Nebarigoshi' (Tohoku-Hokuriku),  and 'Kitamoe' (Hokkaido) showed the strongest grain <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in each geographical group,  and all these varieties,  except for 'Kitamoe',  were found to carry the Zen-type SNP. In recent years,  the number of varieties carrying the Zen-type SNP has increased in the Tohoku-Hokuriku region,  but not in the Hokkaido region. \"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Makiko Chono,  Hitoshi Matsunaka,  Masako Seki,  Masaya Fujita,  Chikako Kiribuchi-Otobe,  Shunsuke Oda,  Hisayo Kojima,  Shingo Nakamura]\"} ], \"id\": \"45\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 25931984\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"25931984\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 31988624\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"31988624\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Breeding science\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2019\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Plant hormone profiling in developing seeds of common wheat (Triticum aestivum L.).\"} , { \"attrname\": \"Abstract\", \"value\": \"This study examined contents of nine plant hormones in developing seeds of field-grown wheat varieties (Triticum aestivum L.) with different seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> using liquid chromatography-mass spectrometry. The varieties showed marked diversity in germination indices at 15C and 20C. Contents of the respective hormones in seeds showed a characteristic pattern during seed maturation from 30-day post anthesis to 60-day post anthesis. Principal component analysis and hierarchical clustering analysis revealed that plant hormone profiles were not correlated with <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> levels,  indicating that hormone contents were not associated with preharvest sprouting (PHS) susceptibility. Indole acetic acid (IAA) contents of mature seeds showed positive correlation with the germination index,  but no other hormone. Response of embryo-half seeds to exogenous abscisic acid (ABA) indicates that ABA sensitivity is correlated with whole-seed germinability,  which can be explained in part by genotypes of MOTHER OF FT AND TFL (MFT) allele modulating ABA signaling of wheat seeds. These results demonstrate that variation in wheat seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> is attributable to ABA sensitivity of mature seeds,  but not to ABA contents in developing seeds. \"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Takakazu Matsuura,  Izumi C Mori,  Eiko Himi,  Takashi Hirayama]\"} ], \"id\": \"46\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 31988624\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"31988624\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 35124171\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"35124171\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Genomics\"} , { \"attrname\": \"Chemical\", \"value\": \"[DNA Transposable Elements]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2022\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Helitron and CACTA DNA transposons actively reshape the common wheat - AK58 genome.\"} , { \"attrname\": \"Abstract\", \"value\": \"Transposable elements (TEs) play a pivotal role in reshaping the plant genome. Helitrons represent a new class of transposable elements recently discovered in animals and plants. Helitrons,  DNA transposons that replicate via a rolling-circle replication mechanism,  are a major driving force behind genome evolution. Since the recent divergence of the modern cultivars (e.g.,  AK58) and landraces (e.g.,  Chinese Spring),  Helitrons appear to have contributed greatly to genome variability. We first identified 214, 665 Helitrons in AK58 by HelitronScanner software and further detected 18, 668 tandem duplicated Helitron regions (TDHRs) from all the Helitrons identified. There are 39% of TDHRs (7289) translocated since the divergence of the AK58 and Chinese Spring genomes. What interested us even more are the 462 TDHRs exclusive to the AK58 genome. We also found 235 TDHRs in the 21 centromeric regions and these TDHRs contributed to centromere plasticity. Another very interesting DNA transposon,  CACTA,  accounting for 15% of AK58 genome,  was also the focus of this study because they often inserted into gene rich regions. We found that CACTAs have inserted into many agronomically important genes,  such as seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> gene TaMFT and vernalization gene TaVrn1,  indicating the important role of CACTAs in modern wheat adaptation. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Triticum,  Animals,  Centromere,  Software,  Genome,  Plant,  DNA Transposable Elements]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Zhiyong Wang,  Guangyao Zhao,  Qinghua Yang,  Lifeng Gao,  Chunyuan Liu,  Zhengang Ru,  Daowen Wang,  Jizeng Jia,  Dangqun Cui]\"} ], \"id\": \"47\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 35124171\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"35124171\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 35698038\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"35698038\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"BMC plant biology\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2022\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Combining QTL mapping and gene co-expression network analysis for prediction of candidate genes and molecular network related to yield in wheat.\"} , { \"attrname\": \"Abstract\", \"value\": \"Wheat (Triticum aestivum L.) is an important cereal crop. Increasing grain yield for wheat is always a priority. Due to the complex genome of hexaploid wheat with 21 chromosomes,  it is difficult to identify underlying genes by traditional genetic approach. The combination of genetics and omics analysis has displayed the powerful capability to identify candidate genes for major quantitative trait loci (QTLs),  but such studies have rarely been carried out in wheat. In this study,  candidate genes related to yield were predicted by a combined use of linkage mapping and weighted gene co-expression network analysis (WGCNA) in a recombinant inbred line population. QTL mapping was performed for plant height (PH),  spike length (SL) and seed traits. A total of 68 QTLs were identified for them,  among which,  12 QTLs were stably identified across different environments. Using RNA sequencing,  we scanned the 99, 168 genes expression patterns of the whole spike for the recombinant inbred line population. By the combined use of QTL mapping and WGCNA,  29,  47,  20,  26,  54,  46 and 22 candidate genes were predicted for PH,  SL,  kernel length (KL),  kernel width,  thousand kernel weight,  seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>,  and seed vigor,  respectively. Candidate genes for different traits had distinct preferences. The known PH regulation genes Rht-B and Rht-D,  and the known seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> regulation genes TaMFT can be selected as candidate gene. Moreover,  further experiment revealed that there was a SL regulatory QTL located in an interval of about 7 Mbp on chromosome 7A,  named TaSL1,  which also involved in the regulation of KL. A combination of QTL mapping and WGCNA was applied to predicted wheat candidate genes for PH,  SL and seed traits. This strategy will facilitate the identification of candidate genes for related QTLs in wheat. In addition,  the QTL TaSL1 that had multi-effect regulation of KL and SL was identified,  which can be used for wheat improvement. These results provided valuable molecular marker and gene information for fine mapping and cloning of the yield-related trait loci in the future. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Phenotype,  Triticum,  Plant <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span>,  Chromosome Mapping,  Edible Grain,  Chromosomes,  Plant,  Quantitative Trait Loci]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Jun Wei,  Yu Fang,  Hao Jiang,  Xing-Ting Wu,  Jing-Hong Zuo,  Xian-Chun Xia,  Jin-Quan Li,  Benjamin Stich,  Hong Cao,  Yong-Xiu Liu]\"} ], \"id\": \"48\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 35698038\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"35698038\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"OS06T0498800-01\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL: KNETDATA\", \"description\": \"\", \"pid\": \"OS06T0498800-01\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"TAXID\", \"value\": \"39947\"} ], \"id\": \"49\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"OS06T0498800-01\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"OS06T0498800-01\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"AT1G18100.1\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL: KNETDATA: OMA: TAIR\", \"description\": \"\", \"pid\": \"AT1G18100.1\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"TAXID\", \"value\": \"3702\"} ], \"id\": \"50\", \"contexts\": { } , \"evidences\": [\"OMA Standalone\", \"Imported from database\"], \"value\": \"AT1G18100.1\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"AT1G18100.1\"} , { \"elementOf\": \"TAIR\", \"accession\": \"AT1G18100.1\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PEBP-like_sf\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL\", \"description\": \"\", \"pid\": \"\", \"attributes\": [{ \"attrname\": \"Description\", \"value\": \"PEBP-like superfamily\"} ], \"id\": \"51\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PEBP-like_sf\", \"ofType\": \"Protein Domain\", \"coaccessions\": [{ \"elementOf\": \"IPRO\", \"accession\": \"IPR036610\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PEBP_euk\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL\", \"description\": \"\", \"pid\": \"\", \"attributes\": [{ \"attrname\": \"Description\", \"value\": \"Phosphatidylethanolamine-binding protein,  eukaryotic\"} ], \"id\": \"52\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PEBP_euk\", \"ofType\": \"Protein Domain\", \"coaccessions\": [{ \"elementOf\": \"IPRO\", \"accession\": \"IPR035810\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PEBP\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL\", \"description\": \"\", \"pid\": \"\", \"attributes\": [{ \"attrname\": \"Description\", \"value\": \"Phosphatidylethanolamine-binding protein\"} ], \"id\": \"53\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PEBP\", \"ofType\": \"Protein Domain\", \"coaccessions\": [{ \"elementOf\": \"IPRO\", \"accession\": \"IPR008914\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Phosphatidylethanolamine-bd_CS\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL\", \"description\": \"\", \"pid\": \"\", \"attributes\": [{ \"attrname\": \"Description\", \"value\": \"Phosphatidylethanolamine-binding,  conserved site\"} ], \"id\": \"54\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Phosphatidylethanolamine-bd_CS\", \"ofType\": \"Protein Domain\", \"coaccessions\": [{ \"elementOf\": \"IPRO\", \"accession\": \"IPR001858\"} ]} , { \"annotation\": \"\", \"conames\": [], \"elementOf\": \"ENSEMBL\", \"description\": \"\", \"pid\": \"\", \"attributes\": [], \"id\": \"55\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"A0A1D6CDM8\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"A0A1D6CDM8\"} ]} , { \"annotation\": \"Created:  2001-11-02; Modified:  2022-05-25; Version:  91\", \"conames\": [{ \"name\": \"SP\", \"isPreferred\": \"false\"} , { \"name\": \"Protein SELF-PRUNING\", \"isPreferred\": \"true\"} ], \"elementOf\": \"KNETDATA: UNIPROTKB-SwissProt\", \"description\": \"\", \"pid\": \"O82088\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"4081\"} ], \"id\": \"56\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Protein SELF-PRUNING\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"O82088\"} ]} , { \"annotation\": \"Created:  2001-11-02; Modified:  2022-05-25; Version:  80\", \"conames\": [{ \"name\": \"CEN-like protein 4\", \"isPreferred\": \"true\"} , { \"name\": \"CET4\", \"isPreferred\": \"false\"} ], \"elementOf\": \"KNETDATA: UNIPROTKB-SwissProt\", \"description\": \"\", \"pid\": \"Q9XH42\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"4097\"} ], \"id\": \"57\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"CEN-like protein 4\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"Q9XH42\"} ]} , { \"annotation\": \"Created:  2001-11-02; Modified:  2022-10-12; Version:  79\", \"conames\": [{ \"name\": \"CET1\", \"isPreferred\": \"false\"} , { \"name\": \"CEN-like protein 1\", \"isPreferred\": \"true\"} ], \"elementOf\": \"KNETDATA: UNIPROTKB-SwissProt\", \"description\": \"\", \"pid\": \"Q9XH44\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"4097\"} ], \"id\": \"58\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"CEN-like protein 1\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"Q9XH44\"} ]} , { \"annotation\": \"Created:  2000-05-30; Modified:  2022-05-25; Version:  98\", \"conames\": [{ \"name\": \"Protein CENTRORADIALIS\", \"isPreferred\": \"true\"} , { \"name\": \"CEN\", \"isPreferred\": \"false\"} ], \"elementOf\": \"KNETDATA: UNIPROTKB-SwissProt\", \"description\": \"\", \"pid\": \"Q41261\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"4151\"} ], \"id\": \"59\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Protein CENTRORADIALIS\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"Q41261\"} ]} , { \"annotation\": \"Created:  2016-04-13; Modified:  2022-10-12; Version:  122\", \"conames\": [{ \"name\": \"Protein MOTHER of FT and TFL1 homolog 2\", \"isPreferred\": \"true\"} , { \"name\": \"MFT2\", \"isPreferred\": \"false\"} , { \"name\": \"Os01g0111600\", \"isPreferred\": \"false\"} , { \"name\": \"OsMFT2\", \"isPreferred\": \"false\"} , { \"name\": \"LOC_Os01g02120\", \"isPreferred\": \"false\"} ], \"elementOf\": \"ENSEMBL: KNETDATA: UNIPROTKB-SwissProt\", \"description\": \"\", \"pid\": \"Q9ASJ1\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"TAXID\", \"value\": \"39947\"} ], \"id\": \"60\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Protein MOTHER of FT and TFL1 homolog 2\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"Q9ASJ1\"} ]} , { \"annotation\": \"Created:  2016-04-13; Modified:  2022-10-12; Version:  110\", \"conames\": [{ \"name\": \"Protein MOTHER of FT and TFL1 homolog 1\", \"isPreferred\": \"true\"} , { \"name\": \"MFT1\", \"isPreferred\": \"false\"} , { \"name\": \"Os06g0498800\", \"isPreferred\": \"false\"} , { \"name\": \"OsMFT1\", \"isPreferred\": \"false\"} , { \"name\": \"LOC_Os06g30370\", \"isPreferred\": \"false\"} ], \"elementOf\": \"ENSEMBL: KNETDATA: UNIPROTKB-SwissProt\", \"description\": \"\", \"pid\": \"Q656A5\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"TAXID\", \"value\": \"39947\"} ], \"id\": \"61\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Protein MOTHER of FT and TFL1 homolog 1\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"Q656A5\"} ]} , { \"annotation\": \"Created:  2010-07-13; Modified:  2022-10-12; Version:  111\", \"conames\": [{ \"name\": \"Protein RICE FLOWERING LOCUS T 1\", \"isPreferred\": \"true\"} , { \"name\": \"FTL3\", \"isPreferred\": \"false\"} , { \"name\": \"RFT1\", \"isPreferred\": \"false\"} , { \"name\": \"FT-like protein 3\", \"isPreferred\": \"false\"} , { \"name\": \"LOC_Os06g06300\", \"isPreferred\": \"false\"} , { \"name\": \"Os06g0157500\", \"isPreferred\": \"false\"} , { \"name\": \"FLOWERING LOCUS T-like protein 3\", \"isPreferred\": \"false\"} , { \"name\": \"OsFTL3\", \"isPreferred\": \"false\"} ], \"elementOf\": \"ENSEMBL: KNETDATA: UNIPROTKB-SwissProt\", \"description\": \"\", \"pid\": \"Q8VWH2\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"39947\"} ], \"id\": \"62\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Protein RICE FLOWERING LOCUS T 1\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"Q8VWH2\"} ]} , { \"annotation\": \"Created:  2010-07-13; Modified:  2022-10-12; Version:  114\", \"conames\": [{ \"name\": \"Protein HEADING DATE 3A\", \"isPreferred\": \"true\"} , { \"name\": \"LOC_Os06g06320\", \"isPreferred\": \"false\"} , { \"name\": \"HD3A\", \"isPreferred\": \"false\"} , { \"name\": \"Os06g0157700\", \"isPreferred\": \"false\"} , { \"name\": \"FT-like protein A\", \"isPreferred\": \"false\"} ], \"elementOf\": \"ENSEMBL: KNETDATA: UNIPROTKB-SwissProt\", \"description\": \"\", \"pid\": \"Q93WI9\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"39947\"} ], \"id\": \"63\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Protein HEADING DATE 3A\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"Q93WI9\"} ]} , { \"annotation\": \"Created:  2001-11-02; Modified:  2022-05-25; Version:  78\", \"conames\": [{ \"name\": \"CEN-like protein 2\", \"isPreferred\": \"true\"} , { \"name\": \"CET2\", \"isPreferred\": \"false\"} ], \"elementOf\": \"KNETDATA: UNIPROTKB-SwissProt\", \"description\": \"\", \"pid\": \"Q9XH43\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"4097\"} ], \"id\": \"64\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"CEN-like protein 2\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"Q9XH43\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"seed maturation\", \"isPreferred\": \"true\"} ], \"elementOf\": \"TO\", \"description\": \"This trait can be derived based on the parameters like,  degree of grain filling,  grain hardness,  hull color,  grain moisture,  etc. It can be determined for (a)synchronously with any of these parameters.\", \"pid\": \"TO_0002661\", \"attributes\": [], \"id\": \"65\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"seed maturation\", \"ofType\": \"Trait\", \"coaccessions\": [{ \"elementOf\": \"TO\", \"accession\": \"TO: 0002661\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 25211528\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: TAIR\", \"description\": \"\", \"pid\": \"25211528\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"PloS one\"} , { \"attrname\": \"Chemical\", \"value\": \"[Plant Proteins]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2014\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Seed maturation regulators are related to the control of seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in wheat (Triticum aestivum L.).\"} , { \"attrname\": \"Abstract\", \"value\": \"In Arabidopsis,  the regulation network of the seed maturation program controls the induction of seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. Wheat EST sequences showing homology with the master regulators of seed maturation,  leafy cotyledon1 (LEC1),  LEC2 and FUSCA3 (FUS3),  were searched from databases and designated respectively as TaL1L (LEC1-LIKE),  TaL2L (LEC2-LIKE),  and TaFUS3. TaL1LA,  TaL2LA and TaFUS3 mainly expressed in seeds or embryos,  with the expression limited to the early stages of seed development. Results show that tissue-specific and developmental-stage-dependent expressions are similar to those of seed maturation regulators in Arabidopsis. In wheat cultivars,  the expression level of TaL1LA is correlated significantly with the germination index (GI) of whole seeds at 40 days after pollination (DAP) (r = -0.83**). Expression levels of TaFUS3 and TaL2LA are significantly correlated respectively with GIs at 40 DAP and 50 DAP,  except for dormant cultivars. No correlation was found between the expression level of TaVP1,  orthologue of ABA insensitive3 (ABI3),  and seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. Delay of germination1 (DOG1) was identified as a quantitative trait locus (QTL) for the regulation of seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in Arabidopsis. Its promoter has RY motif,  which is a target sequence of LEC2. Significant correlation was found between the expression of TaDOG1 and seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> except for dormant cultivars. These results indicate that TaL1LA,  TaL2LA,  and TaFUS3 are wheat orthologues of seed maturation regulators. The expressions of these genes affect the level of seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. Furthermore,  the pathways,  which involve seed maturation regulators and TaDOG1,  are important for regulating seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in wheat. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Gene Expression,  Triticum,  Seeds,  Genes,  Plant,  Germination,  Plant <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span>,  Plant Proteins,  Phylogeny,  Expressed Sequence Tags]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Kazuhide Rikiishi,  Masahiko Maekawa]\"} ], \"id\": \"66\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 25211528\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"25211528\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"seed viability\", \"isPreferred\": \"true\"} ], \"elementOf\": \"TO\", \"description\": \"\", \"pid\": \"TO_0000345\", \"attributes\": [], \"id\": \"67\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"seed viability\", \"ofType\": \"Trait\", \"coaccessions\": [{ \"elementOf\": \"TO\", \"accession\": \"TO: 0000345\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Nitric Oxide Storage\", \"isPreferred\": \"true\"} , { \"name\": \"NO storage\", \"isPreferred\": \"false\"} ], \"elementOf\": \"GO\", \"description\": \"The accumulation and maintenance in cells or tissues of nitric oxide (NO). Nitric oxide is stored in the form of dinitrosyl-iron complexes,  which are stabilized,  and possibly sequestered,  by binding to glutathione S-transferase proteins.\", \"pid\": \"GO_0035732\", \"attributes\": [], \"id\": \"68\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Nitric Oxide Storage\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0035732\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"germination rate\", \"isPreferred\": \"true\"} ], \"elementOf\": \"TO\", \"description\": \"Rate of germination of the seed.\", \"pid\": \"TO_0000430\", \"attributes\": [], \"id\": \"69\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"germination rate\", \"ofType\": \"Trait\", \"coaccessions\": [{ \"elementOf\": \"TO\", \"accession\": \"TO: 0000430\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"awn length\", \"isPreferred\": \"true\"} ], \"elementOf\": \"TO\", \"description\": \"An awn morphology trait (TO: 0002718) which is the length of awn (PO: 0025349).\", \"pid\": \"TO_0000072\", \"attributes\": [], \"id\": \"70\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"awn length\", \"ofType\": \"Trait\", \"coaccessions\": [{ \"elementOf\": \"TO\", \"accession\": \"TO: 0000072\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Digestion\", \"isPreferred\": \"true\"} ], \"elementOf\": \"GO\", \"description\": \"The whole of the physical,  chemical,  and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.\", \"pid\": \"GO_0007586\", \"attributes\": [], \"id\": \"71\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Digestion\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0007586\"} , { \"elementOf\": \"Wikipedia\", \"accession\": \"Digestion\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"rolling circle replication\", \"isPreferred\": \"false\"} , { \"name\": \"Rolling Circle DNA Replication\", \"isPreferred\": \"true\"} ], \"elementOf\": \"GO\", \"description\": \"A DNA-dependent DNA replication process in which a single-stranded DNA molecule is synthesized from a circular duplex template. Replication typically does not cease when one circumference has been replicated,  but continues around the circumference several more times,  producing a long single strand comprising multimers of the replicon.\", \"pid\": \"GO_0070581\", \"attributes\": [], \"id\": \"72\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Rolling Circle DNA Replication\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0070581\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"plant height\", \"isPreferred\": \"true\"} ], \"elementOf\": \"T3: TO\", \"description\": \"A whole plant morphology trait (TO: 0000398) which is the height of a whole plant (PO: 0000003).\", \"pid\": \"TO_0000207\", \"attributes\": [], \"id\": \"73\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"plant height\", \"ofType\": \"Trait\", \"coaccessions\": [{ \"elementOf\": \"TO\", \"accession\": \"TO: 0000207\"} ]} , { \"annotation\": \"PROTEIN_CODING\", \"conames\": [{ \"name\": \"MFT1\", \"isPreferred\": \"false\"} , { \"name\": \"E12A11\", \"isPreferred\": \"true\"} , { \"name\": \"OsMFT\", \"isPreferred\": \"true\"} , { \"name\": \"MFT\", \"isPreferred\": \"true\"} , { \"name\": \"OS06G0498800\", \"isPreferred\": \"false\"} , { \"name\": \"OsE12A11\", \"isPreferred\": \"true\"} , { \"name\": \"OSMFT1\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL: KNET\", \"description\": \"\", \"pid\": \"OS06G0498800\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"80\"} , { \"attrname\": \"flagged\", \"value\": \"true\"} , { \"attrname\": \"TAXID\", \"value\": \"39947\"} , { \"attrname\": \"Chromosome\", \"value\": \"6\"} , { \"attrname\": \"END\", \"value\": \"17542480\"} , { \"attrname\": \"BEGIN\", \"value\": \"17539962\"} ], \"id\": \"74\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"OsMFT\", \"ofType\": \"Gene\", \"coaccessions\": [{ \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"LOC_OS06G30370.1\"} , { \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"OS06G0498800\"} ]} , { \"annotation\": \"PROTEIN_CODING\", \"conames\": [{ \"name\": \"MFT1\", \"isPreferred\": \"false\"} , { \"name\": \"E12A11\", \"isPreferred\": \"true\"} , { \"name\": \"AT1G18100.1\", \"isPreferred\": \"false\"} , { \"name\": \"MOTHER OF FT AND TFL1\", \"isPreferred\": \"false\"} , { \"name\": \"AT1G18100\", \"isPreferred\": \"false\"} , { \"name\": \"MFT\", \"isPreferred\": \"false\"} , { \"name\": \"T10F20.11\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: ARAGWAS: ENSEMBL: KNET: TAIR\", \"description\": \"\", \"pid\": \"AT1G18100\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"80\"} , { \"attrname\": \"flagged\", \"value\": \"true\"} , { \"attrname\": \"TAXID\", \"value\": \"3702\"} , { \"attrname\": \"Chromosome\", \"value\": \"1\"} , { \"attrname\": \"END\", \"value\": \"6230194\"} , { \"attrname\": \"BEGIN\", \"value\": \"6227217\"} ], \"id\": \"75\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"E12A11\", \"ofType\": \"Gene\", \"coaccessions\": [{ \"elementOf\": \"AGI_LocusCode\", \"accession\": \"AT1G18100\"} , { \"elementOf\": \"TAIR\", \"accession\": \"AT1G18100\"} , { \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"AT1G18100\"} ]} , { \"annotation\": \"Created:  2016-09-07; Modified:  2022-10-12; Version:  29\", \"conames\": [{ \"name\": \"(thale cress) hypothetical protein\", \"isPreferred\": \"true\"} , { \"name\": \"MFT\", \"isPreferred\": \"false\"} ], \"elementOf\": \"ENSEMBL: UNIPROTKB-TrEMBL\", \"description\": \"\", \"pid\": \"A0A178W7F0\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"3702\"} ], \"id\": \"76\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"(thale cress) hypothetical protein\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"A0A178W7F0\"} ]} , { \"annotation\": \"Created:  2001-12-05; Modified:  2022-10-12; Version:  131\", \"conames\": [{ \"name\": \"Protein MOTHER of FT and TFL1\", \"isPreferred\": \"true\"} , { \"name\": \"MFT\", \"isPreferred\": \"false\"} ], \"elementOf\": \"ENSEMBL: UNIPROTKB-SwissProt\", \"description\": \"\", \"pid\": \"Q9XFK7\", \"attributes\": [{ \"attrname\": \"Pheno\", \"value\": \"No visible phenotype under normal growth conditions,  but mutant seeds show hypersensitivity to ABA during seed germination.\"} , { \"attrname\": \"TAXID\", \"value\": \"3702\"} ], \"id\": \"77\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Protein MOTHER of FT and TFL1\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"UNIPROTKB\", \"accession\": \"Q9XFK7\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Nucleus\", \"isPreferred\": \"true\"} , { \"name\": \"GO: 0005634\", \"isPreferred\": \"false\"} , { \"name\": \"cell nucleus\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells,  the nucleus contains all of the cell's chromosomes except the organellar chromosomes,  and is the site of RNA synthesis and processing. In some species,  or in specialized cell types,  RNA metabolism or DNA replication may be absent.\", \"pid\": \"GO: 0005634;GO: 0005634;GO_0005634;GO_0005634\", \"attributes\": [], \"id\": \"78\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Nucleus\", \"ofType\": \"Cellular_Component\", \"coaccessions\": [{ \"elementOf\": \"Wikipedia\", \"accession\": \"Cell_nucleus\"} , { \"elementOf\": \"GO\", \"accession\": \"GO: 0005634\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0005737\", \"isPreferred\": \"false\"} , { \"name\": \"Cytoplasm\", \"isPreferred\": \"true\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"The contents of a cell excluding the plasma membrane and nucleus,  but including other subcellular structures.\", \"pid\": \"GO: 0005737;GO: 0005737;GO_0005737;GO_0005737\", \"attributes\": [], \"id\": \"79\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Cytoplasm\", \"ofType\": \"Cellular_Component\", \"coaccessions\": [{ \"elementOf\": \"Wikipedia\", \"accession\": \"Cytoplasm\"} , { \"elementOf\": \"GO\", \"accession\": \"GO: 0005737\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"down regulation of flower development\", \"isPreferred\": \"false\"} , { \"name\": \"Negative Regulation Of Flower Development\", \"isPreferred\": \"true\"} , { \"name\": \"downregulation of flower development\", \"isPreferred\": \"false\"} , { \"name\": \"down-regulation of flower development\", \"isPreferred\": \"false\"} , { \"name\": \"GO: 0009910\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"Any process that stops,  prevents,  or reduces the frequency,  rate or extent of flower development.\", \"pid\": \"GO: 0009910;GO: 0009910;GO_0009910;GO_0009910\", \"attributes\": [], \"id\": \"80\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Negative Regulation Of Flower Development\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0009910\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Vegetative To Reproductive Phase Transition Of Meristem\", \"isPreferred\": \"true\"} , { \"name\": \"transition from vegetative to reproductive phase\", \"isPreferred\": \"false\"} , { \"name\": \"GO: 0010228\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"The process involved in transforming a meristem that produces vegetative structures,  such as leaves,  into a meristem that produces reproductive structures,  such as a flower or an inflorescence.\", \"pid\": \"GO: 0010228;GO: 0010228;GO_0010228;GO_0010228\", \"attributes\": [], \"id\": \"81\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Vegetative To Reproductive Phase Transition Of Meristem\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0010228\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0009908\", \"isPreferred\": \"false\"} , { \"name\": \"Flower Development\", \"isPreferred\": \"true\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"The process whose specific outcome is the progression of the flower over time,  from its formation to the mature structure. The flower is the reproductive structure in a plant,  and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.\", \"pid\": \"GO: 0009908;GO: 0009908;GO_0009908;GO_0009908\", \"attributes\": [], \"id\": \"82\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Flower Development\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0048409\"} , { \"elementOf\": \"GO\", \"accession\": \"GO: 0009908\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0030154\", \"isPreferred\": \"false\"} , { \"name\": \"Cell Differentiation\", \"isPreferred\": \"true\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"The process in which relatively unspecialized cells,  e.g. embryonic or regenerative cells,  acquire specialized structural and\\/or functional features that characterize the cells,  tissues,  or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.\", \"pid\": \"GO: 0030154;GO: 0030154;GO_0030154;GO_0030154\", \"attributes\": [], \"id\": \"83\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Cell Differentiation\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0030154\"} , { \"elementOf\": \"Wikipedia\", \"accession\": \"Cellular_differentiation\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"OS01T0111600-01\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL: KNETDATA\", \"description\": \"\", \"pid\": \"OS01T0111600-01\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"TAXID\", \"value\": \"39947\"} ], \"id\": \"84\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"OS01T0111600-01\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"OS01T0111600-01\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0008429\", \"isPreferred\": \"false\"} , { \"name\": \"Phosphatidylethanolamine Binding\", \"isPreferred\": \"true\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"Binding to a phosphatidylethanolamine,  a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine.\", \"pid\": \"GO: 0008429;GO: 0008429;GO_0008429;GO_0008429\", \"attributes\": [], \"id\": \"85\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Phosphatidylethanolamine Binding\", \"ofType\": \"Molecular_Function\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0008429\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0005783\", \"isPreferred\": \"false\"} , { \"name\": \"Endoplasmic Reticulum\", \"isPreferred\": \"true\"} , { \"name\": \"ER\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"The irregular network of unit membranes,  visible only by electron microscopy,  that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels,  which are often expanded into slitlike cavities called cisternae. The ER takes two forms,  rough (or granular),  with ribosomes adhering to the outer surface,  and smooth (with no ribosomes attached).\", \"pid\": \"GO: 0005783;GO: 0005783;GO_0005783;GO_0005783\", \"attributes\": [], \"id\": \"86\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Endoplasmic Reticulum\", \"ofType\": \"Cellular_Component\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0005783\"} , { \"elementOf\": \"Wikipedia\", \"accession\": \"Endoplasmic_reticulum\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"OS06T0157500-01\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL: KNETDATA\", \"description\": \"\", \"pid\": \"OS06T0157500-01\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"39947\"} ], \"id\": \"87\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"OS06T0157500-01\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"OS06T0157500-01\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0009909\", \"isPreferred\": \"false\"} , { \"name\": \"Regulation Of Flower Development\", \"isPreferred\": \"true\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"Any process that modulates the frequency,  rate or extent of flower development.\", \"pid\": \"GO: 0009909;GO: 0009909;GO_0009909;GO_0009909\", \"attributes\": [], \"id\": \"88\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Regulation Of Flower Development\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0009909\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0048573\", \"isPreferred\": \"false\"} , { \"name\": \"response to night length,  flowering\", \"isPreferred\": \"false\"} , { \"name\": \"response to photoperiod,  flowering\", \"isPreferred\": \"false\"} , { \"name\": \"photoperiodic control of inflorescence development\", \"isPreferred\": \"false\"} , { \"name\": \"response to day length,  flowering\", \"isPreferred\": \"false\"} , { \"name\": \"Photoperiodism,  Flowering\", \"isPreferred\": \"true\"} , { \"name\": \"photoperiodic control of flowering time\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"A change from the vegetative to the reproductive phase as a result of detection of,  or exposure to,  a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.\", \"pid\": \"GO: 0048573;GO: 0048573;GO_0048573;GO_0048573\", \"attributes\": [], \"id\": \"89\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Photoperiodism,  Flowering\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0048573\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0010229\", \"isPreferred\": \"false\"} , { \"name\": \"Inflorescence Development\", \"isPreferred\": \"true\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"The process whose specific outcome is the progression of an inflorescence over time,  from its formation to the mature structure.\", \"pid\": \"GO: 0010229;GO: 0010229;GO_0010229;GO_0010229\", \"attributes\": [], \"id\": \"90\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Inflorescence Development\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0010229\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Regulation Of Timing Of Transition From Vegetative To Reproductive Phase\", \"isPreferred\": \"true\"} , { \"name\": \"GO: 0048510\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem,  and\\/or the rate at which the change occurs.\", \"pid\": \"GO: 0048510;GO: 0048510;GO_0048510;GO_0048510\", \"attributes\": [], \"id\": \"91\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Regulation Of Timing Of Transition From Vegetative To Rep...\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0048510\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"OS06T0157700-01\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL: KNETDATA\", \"description\": \"\", \"pid\": \"OS06T0157700-01\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"39947\"} ], \"id\": \"92\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"OS06T0157700-01\", \"ofType\": \"Protein\", \"coaccessions\": [{ \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"OS06T0157700-01\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0048572\", \"isPreferred\": \"false\"} , { \"name\": \"long-night photoperiodism\", \"isPreferred\": \"false\"} , { \"name\": \"Short-day Photoperiodism\", \"isPreferred\": \"true\"} , { \"name\": \"response to short-day\", \"isPreferred\": \"false\"} , { \"name\": \"response to long-night\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"Any process that results in a change in state or activity of an organism (in terms of movement,  secretion,  enzyme production,  gene expression,  etc.) as a result of detection of,  or exposure to,  a day length that falls short of a particular duration known as the 'critical day length'. The critical day length varies between species. Although the term short-day is used,  most species actually respond to the duration of the night,  so that the response will occur when a period of darkness exceeds the number of hours defined by 24 hours minus the critical day length.\", \"pid\": \"GO: 0048572;GO: 0048572;GO_0048572;GO_0048572\", \"attributes\": [], \"id\": \"93\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Short-day Photoperiodism\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0048572\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"short-day photoperiodic control of flowering time\", \"isPreferred\": \"false\"} , { \"name\": \"short-day photoperiodic control of flowering\", \"isPreferred\": \"false\"} , { \"name\": \"response to short-day,  flowering\", \"isPreferred\": \"false\"} , { \"name\": \"GO: 0048575\", \"isPreferred\": \"false\"} , { \"name\": \"response to long-night,  flowering\", \"isPreferred\": \"false\"} , { \"name\": \"Short-day Photoperiodism,  Flowering\", \"isPreferred\": \"true\"} , { \"name\": \"long-night photoperiodism,  flowering\", \"isPreferred\": \"false\"} , { \"name\": \"short-day photoperiodic control of inflorescence development\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"A change from vegetative to reproductive phase as a result of detection of,  or exposure to,  a period of light that falls short of the critical day length. The critical day length varies between species. Although the term is short-day is used,  most species actually respond to the duration of the night,  so that the response will occur when a period of darkness exceeds the number of hours defined by 24 minus the critical day length.\", \"pid\": \"GO: 0048575;GO: 0048575;GO_0048575;GO_0048575\", \"attributes\": [], \"id\": \"94\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Short-day Photoperiodism,  Flowering\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0048575\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"drought resistance (exact)\", \"isPreferred\": \"false\"} , { \"name\": \"drought tolerance\", \"isPreferred\": \"true\"} ], \"elementOf\": \"TO\", \"description\": \"Becoming tolerant to drought like conditions of minimal or no water content in the growth environment.\", \"pid\": \"TO_0000276\", \"attributes\": [], \"id\": \"95\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"drought tolerance\", \"ofType\": \"Trait\", \"coaccessions\": [{ \"elementOf\": \"TO\", \"accession\": \"TO: 0000276\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 30671680\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"30671680\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Rice (New York,  N.Y.)\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2019\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"The MKKK62-MKK3-MAPK7\\/14 module negatively regulates seed dormancy in rice.\"} , { \"attrname\": \"Abstract\", \"value\": \"Seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> directly affects the phenotype of pre-harvest sprouting,  and ultimately affects the quality and yield of rice seeds. Although many genes controlling seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> have been cloned from cereals,  the regulatory mechanisms controlling this process are complex,  and much remains unknown. The MAPK cascade is involved in many signal transduction pathways. Recently,  MKK3 has been reported to be involved in the regulation of seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>,  but its mechanism of action is unclear. We found that MKKK62-overexpressing rice lines (OE) lost seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. Further analyses showed that the abscisic acid (ABA) sensitivity of OE lines was decreased. In yeast two-hybrid experiments,  MKKK62 interacted with MKK3,  and MKK3 interacted with MAPK7 and MAPK14. Knock-out experiments confirmed that MKK3,  MAPK7,  and MAPK14 were involved in the regulation of seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. The OE lines showed decreased transcript levels of OsMFT,  a homolog of a gene that controls seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in wheat. The up-regulation of OsMFT in MKK3-knockout lines (OE\\/mkk3) and MAPK7\\/14-knockout lines (OE\\/mapk7\\/mapk14) indicated that the MKKK62-MKK3-MAPK7\\/MAPK14 system controlled seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> by regulating the transcription of OsMFT. Our results showed that MKKK62 negatively controls seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in rice,  and that during the germination stage and the late stage of seed maturation,  ABA sensitivity and OsMFT transcription are negatively controlled by MKKK62. Our results have clarified the entire MAPK cascade controlling seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in rice. Together,  these results indicate that protein modification by phosphorylation plays a key role in controlling seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. \"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Xingxue Mao,  Jianjun Zhang,  Wuge Liu,  Shijuan Yan,  Qing Liu,  Hua Fu,  Junliang Zhao,  Wenjie Huang,  Jingfang Dong,  Shaohong Zhang,  Tifeng Yang,  Wu Yang,  Bin Liu,  Feng Wang]\"} ], \"id\": \"96\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 30671680\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"30671680\"} ]} , { \"annotation\": \"\", \"conames\": [], \"elementOf\": \"TAIR\", \"description\": \"\", \"pid\": \"\", \"attributes\": [{ \"attrname\": \"Phenotype\", \"value\": \"Decreased germination when grown in the presence of ABA\"} ], \"id\": \"97\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"DECREASED GERMINATION WHEN GROWN IN THE PRESENCE OF ABA\", \"ofType\": \"Phenotype\", \"coaccessions\": [{ \"elementOf\": \"TAIR-Pheno\", \"accession\": \"DECREASED GERMINATION WHEN GROWN IN THE PRESENCE OF ABA\"} ]} , { \"annotation\": \"\", \"conames\": [], \"elementOf\": \"TAIR\", \"description\": \"\", \"pid\": \"\", \"attributes\": [{ \"attrname\": \"Phenotype\", \"value\": \"Decreased rate of germination in the presence of ABA\"} ], \"id\": \"98\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"DECREASED RATE OF GERMINATION IN THE PRESENCE OF ABA\", \"ofType\": \"Phenotype\", \"coaccessions\": [{ \"elementOf\": \"TAIR-Pheno\", \"accession\": \"DECREASED RATE OF GERMINATION IN THE PRESENCE OF ABA\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0009737\", \"isPreferred\": \"false\"} , { \"name\": \"Response To Abscisic Acid\", \"isPreferred\": \"true\"} , { \"name\": \"response to abscisic acid stimulus\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"Any process that results in a change in state or activity of a cell or an organism (in terms of movement,  secretion,  enzyme production,  gene expression,  etc.) as a result of an abscisic acid stimulus.\", \"pid\": \"GO: 0009737;GO: 0009737;GO_0009737;GO_0009737\", \"attributes\": [], \"id\": \"99\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Response To Abscisic Acid\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0009737\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"GO: 0010030\", \"isPreferred\": \"false\"} , { \"name\": \"Positive Regulation Of Seed Germination\", \"isPreferred\": \"true\"} , { \"name\": \"up-regulation of seed germination\", \"isPreferred\": \"false\"} , { \"name\": \"up regulation of seed germination\", \"isPreferred\": \"false\"} , { \"name\": \"upregulation of seed germination\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"Any process that activates or increase the rate of seed germination.\", \"pid\": \"GO: 0010030;GO: 0010030;GO_0010030;GO_0010030\", \"attributes\": [], \"id\": \"100\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Positive Regulation Of Seed Germination\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0010030\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 24444091\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: TAIR\", \"description\": \"\", \"pid\": \"24444091\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"The New phytologist\"} , { \"attrname\": \"Chemical\", \"value\": \"[Arabidopsis Proteins,  Gibberellins,  Soil,  Nitrates,  Plant Growth Regulators]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2014\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Environment sensing in spring-dispersed seeds of a winter annual Arabidopsis influences the regulation of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> to align germination potential with seasonal changes.\"} , { \"attrname\": \"Abstract\", \"value\": \"Seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycling plays a crucial role in the lifecycle timing of many plants. Little is known of how the seeds respond to the soil seed bank environment following dispersal in spring into the short-term seed bank before seedling emergence in autumn. Seeds of the winter annual Arabidopsis ecotype Cvi were buried in field soils in spring and recovered monthly until autumn and their molecular eco-physiological responses were recorded. DOG1 expression is initially low and then increases as <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> increases. MFT expression is negatively correlated with germination potential. Abscisic acid (ABA) and gibberellin (GA) signalling responds rapidly following burial and adjusts to the seasonal change in soil temperature. Collectively these changes align germination potential with the optimum climate space for seedling emergence. Seeds naturally dispersed to the soil in spring enter a shallow <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycle dominated by spatial sensing that adjusts germination potential to the maximum when soil environment is most favourable for germination and seedling emergence upon soil disturbance. This behaviour differs subtly from that of seeds overwintered in the soil seed bank to spread the period of potential germination in the seed population (existing seed bank and newly dispersed). As soil temperature declines in autumn,  deep <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> is re-imposed as seeds become part of the persistent seed bank. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Arabidopsis Proteins,  Seeds,  Signal Transduction,  Arabidopsis,  Gibberellins,  Gene Expression Regulation,  Plant,  Plant <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span>,  Soil,  Nitrates,  Seasons,  Seed Dispersal,  Plant Growth Regulators]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Steven Footitt,  Heather A Clay,  Katherine Dent,  William E Finch-Savage]\"} ], \"id\": \"101\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 24444091\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"24444091\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 23754415\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: TAIR\", \"description\": \"\", \"pid\": \"23754415\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Proceedings of the National Academy of Sciences of the United States of America\"} , { \"attrname\": \"Chemical\", \"value\": \"[Arabidopsis Proteins,  SPT protein,  Arabidopsis,  Basic Helix-Loop-Helix Transcription Factors]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2013\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Differential control of seed primary <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in Arabidopsis ecotypes by the transcription factor SPATULA.\"} , { \"attrname\": \"Abstract\", \"value\": \"Freshly matured seeds exhibit primary <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>,  which prevents germination until environmental conditions are favorable. The establishment of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> occurs during seed development and involves both genetic and environmental factors that impact on the ratio of two antagonistic phytohormones:  abscisic acid (ABA),  which promotes <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>,  and gibberellic acid,  which promotes germination. Although our understanding of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> breakage in mature seeds is well advanced,  relatively little is known about the mechanisms involved in establishing <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> during seed maturation. We previously showed that the SPATULA (SPT) transcription factor plays a key role in regulating seed germination. Here we investigate its role during seed development and find that,  surprisingly,  it has opposite roles in setting <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in Landsberg erecta and Columbia Arabidopsis ecotypes. We also find that SPT regulates expression of five transcription factor encoding genes:  ABA-INSENSITIVE4 (ABI4) and ABI5,  which mediate ABA signaling; REPRESSOR-OF-GA (RGA) and RGA-LIKE3 involved in gibberellic acid signaling; and MOTHER-OF-FT-AND-TFL1 (MFT) that we show here promotes Arabidopsis seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. Although ABI4,  RGA,  and MFT are repressed by SPT,  ABI5 and RGL3 are induced. Furthermore,  we show that RGA,  MFT,  and ABI5 are direct targets of SPT in vivo. We present a model in which SPT drives two antagonistic \\\"<span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>-repressing\\\" and \\\"<span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>-promoting\\\" routes that operate simultaneously in freshly matured seeds. Each of these routes has different impacts and this in turn explains the opposite effect of SPT on seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> of the two ecotypes analyzed here. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Arabidopsis Proteins,  Species Specificity,  Arabidopsis,  Genes,  Plant,  Germination,  Gene Expression Regulation,  Plant,  Plant <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span>,  Mutation,  Basic Helix-Loop-Helix Transcription Factors]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Fabin E Vaistij,  Yinbo Gan,  Steven Penfield,  Alison D Gilday,  Anuja Dave,  Zhesi He,  Eve-Marie Josse,  Giltsu Choi,  Karen J Halliday,  Ian A Graham]\"} ], \"id\": \"102\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 23754415\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"23754415\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 23590427\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: TAIR\", \"description\": \"\", \"pid\": \"23590427\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"The Plant journal :  for cell and molecular biology\"} , { \"attrname\": \"Chemical\", \"value\": \"[Arabidopsis Proteins,  MFT protein,  Arabidopsis,  DOG1 protein,  Arabidopsis,  Intracellular Signaling Peptides and Proteins,  Soil,  Nitrates,  Plant Growth Regulators,  Carrier Proteins]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2013\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Temperature,  light and nitrate sensing coordinate Arabidopsis seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycling,  resulting in winter and summer annual phenotypes.\"} , { \"attrname\": \"Abstract\", \"value\": \"Seeds use environmental cues to sense the seasons and their surroundings to initiate the life cycle of the plant. The <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycling underlying this process is extensively described,  but the molecular mechanism is largely unknown. To address this we selected a range of representative genes from published array experiments in the laboratory,  and investigated their expression patterns in seeds of Arabidopsis ecotypes with contrasting life cycles over an annual <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycle in the field. We show how mechanisms identified in the laboratory are coordinated in response to the soil environment to determine the <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycles that result in winter and summer annual phenotypes. Our results are consistent with a seed-specific response to seasonal temperature patterns (temporal sensing) involving the gene DELAY OF GERMINATION 1 (DOG1) that indicates the correct season,  and concurrent temporally driven co-opted mechanisms that sense spatial signals,  i.e. nitrate,  via CBL-INTERACTING PROTEIN KINASE 23 (CIPK23) phosphorylation of the NITRATE TRANSPORTER 1 (NRT1.1),  and light,  via PHYTOCHROME A (PHYA). In both ecotypes studied,  when all three genes have low expression there is enhanced GIBBERELLIN 3 BETA-HYDROXYLASE 1 (GA3ox1) expression,  exhumed seeds have the potential to germinate in the laboratory,  and the initiation of seedling emergence occurs following soil disturbance (exposure to light) in the field. Unlike DOG1,  the expression of MOTHER of FLOWERING TIME (MFT) has an opposite thermal response in seeds of the two ecotypes,  indicating a role in determining their different <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycling phenotypes. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Temperature,  Seeds,  Signal Transduction,  Arabidopsis,  Germination,  Plant <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span>,  Intracellular Signaling Peptides and Proteins,  Nitrates,  Organ Specificity,  Plant Growth Regulators,  Seedlings,  Phenotype,  Arabidopsis Proteins,  Time Factors,  Light,  Gene Expression Regulation,  Plant,  Soil,  Environment,  Seasons,  Carrier Proteins,  Cluster Analysis]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Steven Footitt,  Ziyue Huang,  Heather A Clay,  Andrew Mead,  William E Finch-Savage]\"} ], \"id\": \"103\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 23590427\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"23590427\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 22128331\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: TAIR\", \"description\": \"\", \"pid\": \"22128331\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Proceedings of the National Academy of Sciences of the United States of America\"} , { \"attrname\": \"Chemical\", \"value\": \"[Nitrates,  Plant Growth Regulators]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2011\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"<span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span> cycling in Arabidopsis seeds is controlled by seasonally distinct hormone-signaling pathways.\"} , { \"attrname\": \"Abstract\", \"value\": \"Seeds respond to environmental signals,  tuning their <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycles to the seasons and thereby determining the optimum time for plant establishment. The molecular regulation of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycling is unknown,  but an extensive range of mechanisms have been identified in laboratory experiments. Using a targeted investigation of gene expression over the <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycle of Arabidopsis seeds in the field,  we investigated how these mechanisms are seasonally coordinated. Depth of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> and gene expression patterns were correlated with seasonal changes in soil temperature. The results were consistent with abscisic acid (ABA) signaling linked to deep <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in winter being repressed in spring concurrent with enhanced DELLA repression of germination as depth of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> decreased. <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span> increased during winter as soil temperature declined and expression of ABA synthesis (NCED6) and gibberellic acid (GA) catabolism (GA2ox2) genes increased. This was linked to an increase in endogenous ABA that plateaus,  but <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> and DOG1 and MFT expression continued to increase. The expression of SNF1-related protein kinases,  SnrK 2.1 and 2.4,  also increased consistent with enhanced ABA signaling and sensitivity being modulated by seasonal soil temperature. <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span> then declined in spring and summer. Endogenous ABA decreased along with positive ABA signaling as expression of ABI2,  ABI4,  and ABA catabolism (CYP707A2) and GA synthesis (GA3ox1) genes increased. However,  during the low-<span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> phase in the summer,  expression of transcripts for the germination repressors RGA and RGL2 increased. Unlike deep winter <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>,  this represson can be removed on exposure to light,  enabling the completion of germination at the correct time of year. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Seeds,  Signal Transduction,  Time Factors,  Arabidopsis,  Gene Expression Regulation,  Plant,  Plant <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span>,  Nitrates,  Seasons,  Plant Growth Regulators]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Steven Footitt,  Isabel Douterelo-Soler,  Heather Clay,  William E Finch-Savage]\"} ], \"id\": \"104\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 22128331\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"22128331\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 28240777\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: TAIR\", \"description\": \"\", \"pid\": \"28240777\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Plant,  cell  environment\"} , { \"attrname\": \"Chemical\", \"value\": \"[Arabidopsis Proteins,  72S9A8J5GW Abscisic Acid]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2017\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"A laboratory simulation of Arabidopsis seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycling provides new insight into its regulation by clock genes and the <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>-related genes DOG1,  MFT,  CIPK23 and PHYA.\"} , { \"attrname\": \"Abstract\", \"value\": \"Environmental signals drive seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycling in the soil to synchronize germination with the optimal time of year,  a process essential for species' fitness and survival. Previous correlation of transcription profiles in exhumed seeds with annual environmental signals revealed the coordination of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>-regulating mechanisms with the soil environment. Here,  we developed a rapid and robust laboratory <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycling simulation. The utility of this simulation was tested in two ways:  firstly,  using mutants in known <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>-related genes [DELAY OF GERMINATION 1 (DOG1),  MOTHER OF FLOWERING TIME (MFT),  CBL-INTERACTING PROTEIN KINASE 23 (CIPK23) and PHYTOCHROME A (PHYA)] and secondly,  using further mutants,  we test the hypothesis that components of the circadian clock are involved in coordination of the annual seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycle. The rate of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> induction and relief differed in all lines tested. In the mutants,  dog1-2 and mft2,  <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> induction was reduced but not absent. DOG1 is not absolutely required for <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. In cipk23 and phyA <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>,  induction was accelerated. Involvement of the clock in <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> cycling was clear when mutants in the morning and evening loops of the clock were compared. <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span> induction was faster when the morning loop was compromised and delayed when the evening loop was compromised. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Darkness,  Temperature,  Arabidopsis,  Genes,  Plant,  Germination,  Plant <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span>,  Abscisic Acid,  Arabidopsis Proteins,  Time Factors,  Computer Simulation,  Gene Expression Regulation,  Plant,  Transcription,  Genetic,  Biological Clocks,  Ecotype,  Mutation,  Seasons,  Islands]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Steven Footitt,  Hlya ler-Footitt,  Angela J Hambidge,  William E Finch-Savage]\"} ], \"id\": \"105\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 28240777\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"28240777\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 26873978\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: TAIR\", \"description\": \"\", \"pid\": \"26873978\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Journal of experimental botany\"} , { \"attrname\": \"Chemical\", \"value\": \"[Fatty Acids,  Unsaturated,  Arabidopsis Proteins,  MFT protein,  Arabidopsis,  Intracellular Signaling Peptides and Proteins,  72S9A8J5GW Abscisic Acid,  67204-66-4 12-oxophytodienoic acid,  Carrier Proteins,  Oxylipins]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2016\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Regulation of Arabidopsis thaliana seed dormancy and germination by 12-oxo-phytodienoic acid.\"} , { \"attrname\": \"Abstract\", \"value\": \"We previously demonstrated that the oxylipin 12-oxo-phytodienoic acid (OPDA) acts along with abscisic acid to regulate seed germination in Arabidopsis thaliana,  but the mechanistic details of this synergistic interaction remain to be elucidated. Here,  we show that OPDA acts through the germination inhibition effects of abscisic acid,  the abscisic acid-sensing ABI5 protein,  and the gibberellin-sensing RGL2 DELLA protein. We further demonstrate that OPDA also acts through another <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>-promoting factor,  MOTHER-OF-FT-AND-TFL1 (MFT). Both abscisic acid and MFT positively feed back into the OPDA pathway by promoting its accumulation. These results confirm the central role of OPDA in regulating seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> and germination in A. thaliana and underline the complexity of interactions between OPDA and other <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>-promoting factors such as abscisic acid,  RGL2,  and MFT. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Arabidopsis,  Germination,  Plant <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span>,  Intracellular Signaling Peptides and Proteins,  Abscisic Acid,  Biosynthetic Pathways,  Oxylipins,  Fatty Acids,  Unsaturated,  Arabidopsis Proteins,  Models,  Biological,  Protein Binding,  Mutation,  Carrier Proteins]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Anuja Dave,  Fabin E Vaistij,  Alison D Gilday,  Steven D Penfield,  Ian A Graham]\"} ], \"id\": \"106\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 26873978\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"26873978\"} ]} , { \"annotation\": \"PROTEIN_CODING\", \"conames\": [{ \"name\": \"E12A11\", \"isPreferred\": \"true\"} , { \"name\": \"MFT2\", \"isPreferred\": \"false\"} , { \"name\": \"OsMFT\", \"isPreferred\": \"true\"} , { \"name\": \"MFT\", \"isPreferred\": \"true\"} , { \"name\": \"OsE12A11\", \"isPreferred\": \"true\"} , { \"name\": \"OS01G0111600\", \"isPreferred\": \"false\"} , { \"name\": \"OSMFT2\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL: KNET\", \"description\": \"\", \"pid\": \"OS01G0111600\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"80\"} , { \"attrname\": \"flagged\", \"value\": \"true\"} , { \"attrname\": \"TAXID\", \"value\": \"39947\"} , { \"attrname\": \"Chromosome\", \"value\": \"1\"} , { \"attrname\": \"END\", \"value\": \"615631\"} , { \"attrname\": \"BEGIN\", \"value\": \"612564\"} ], \"id\": \"107\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"OsMFT\", \"ofType\": \"Gene\", \"coaccessions\": [{ \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"OS01G0111600\"} , { \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"LOC_OS01G02120.1\"} ]} , { \"annotation\": \"PROTEIN_CODING\", \"conames\": [{ \"name\": \"RFT1\", \"isPreferred\": \"true\"} , { \"name\": \"OS06G0157500\", \"isPreferred\": \"false\"} ], \"elementOf\": \"ENSEMBL: KNET\", \"description\": \"\", \"pid\": \"OS06G0157500\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"39947\"} , { \"attrname\": \"Chromosome\", \"value\": \"6\"} , { \"attrname\": \"END\", \"value\": \"2928474\"} , { \"attrname\": \"BEGIN\", \"value\": \"2926823\"} ], \"id\": \"108\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"RFT1\", \"ofType\": \"Gene\", \"coaccessions\": [{ \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"OS06G0157500\"} , { \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"LOC_OS06G06300.1\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"FT\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL\", \"description\": \"\", \"pid\": \"\", \"attributes\": [{ \"attrname\": \"Description\", \"value\": \"Protein FLOWERING LOCUS T\"} ], \"id\": \"109\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"FT\", \"ofType\": \"Protein Domain\", \"coaccessions\": [{ \"elementOf\": \"IPRO\", \"accession\": \"IPR031095\"} ]} , { \"annotation\": \"PROTEIN_CODING\", \"conames\": [{ \"name\": \"OS06G0157700\", \"isPreferred\": \"false\"} , { \"name\": \"HD3A\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ENSEMBL: KNET\", \"description\": \"\", \"pid\": \"OS06G0157700\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"39947\"} , { \"attrname\": \"Chromosome\", \"value\": \"6\"} , { \"attrname\": \"END\", \"value\": \"2942452\"} , { \"attrname\": \"BEGIN\", \"value\": \"2940004\"} ], \"id\": \"110\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"HD3A\", \"ofType\": \"Gene\", \"coaccessions\": [{ \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"OS06G0157700\"} , { \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"LOC_OS06G06320.1\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"chr1: 6228448\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ARAGWAS\", \"description\": \"\", \"pid\": \"\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"3702\"} , { \"attrname\": \"Chromosome\", \"value\": \"1\"} , { \"attrname\": \"END\", \"value\": \"6228448\"} , { \"attrname\": \"BEGIN\", \"value\": \"6228448\"} ], \"id\": \"111\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"chr1: 6228448\", \"ofType\": \"SNP\", \"coaccessions\": [{ \"elementOf\": \"ARAGWAS\", \"accession\": \"CHR1: 6228448\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"aLRLpMRL125\", \"isPreferred\": \"true\"} ], \"elementOf\": \"ARAGWAS: ARAPHENO\", \"description\": \"\", \"pid\": \"\", \"attributes\": [{ \"attrname\": \"study\", \"value\": \"Salt induced changes in Root System Architecture\"} , { \"attrname\": \"scoring\", \"value\": \"EZ-Rhizo - the average length of lateral root per main root length at 125 mM NaCl\"} , { \"attrname\": \"growth_conditions\", \"value\": \"1\\/2 MS medium,  1% agar,  pH 5.8 with KOH,  plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.\"} ], \"id\": \"112\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"aLRLpMRL125\", \"ofType\": \"Phenotype\", \"coaccessions\": [{ \"elementOf\": \"ARAPHENO\", \"accession\": \"695\"} , { \"elementOf\": \"ARAGWAS\", \"accession\": \"ALRLPMRL125\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Phosphorylation\", \"isPreferred\": \"true\"} , { \"name\": \"GO: 0016310\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"The process of introducing a phosphate group into a molecule,  usually with the formation of a phosphoric ester,  a phosphoric anhydride or a phosphoric amide.\", \"pid\": \"GO: 0016310;GO: 0016310;GO_0016310;GO_0016310\", \"attributes\": [], \"id\": \"113\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"GO: 0016310\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0016310\"} , { \"elementOf\": \"Wikipedia\", \"accession\": \"Phosphorylation\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Secretion\", \"isPreferred\": \"true\"} ], \"elementOf\": \"GO\", \"description\": \"The controlled release of a substance by a cell or a tissue.\", \"pid\": \"GO_0046903\", \"attributes\": [], \"id\": \"114\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Secretion\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0046903\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Reverse Transcription\", \"isPreferred\": \"true\"} ], \"elementOf\": \"GO\", \"description\": \"A DNA synthesis process that uses RNA as the initial template for synthesis of DNA,  but which also includes an RNase activity to remove the RNA strand of an RNA-DNA heteroduplex produced by the RNA-dependent synthesis step and use of the initial DNA strand as a template for DNA synthesis.\", \"pid\": \"GO_0001171\", \"attributes\": [], \"id\": \"115\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Reverse Transcription\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"Wikipedia\", \"accession\": \"Reverse_transcription\"} , { \"elementOf\": \"GO\", \"accession\": \"GO: 0001171\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Methylation\", \"isPreferred\": \"true\"} , { \"name\": \"GO: 0032259\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"The process in which a methyl group is covalently attached to a molecule.\", \"pid\": \"GO: 0032259;GO: 0032259;GO_0032259;GO_0032259\", \"attributes\": [], \"id\": \"116\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"GO: 0032259\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"Wikipedia\", \"accession\": \"Methylation\"} , { \"elementOf\": \"GO\", \"accession\": \"GO: 0032259\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Demethylation\", \"isPreferred\": \"true\"} , { \"name\": \"GO: 0070988\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"The process of removing one or more methyl groups from a molecule.\", \"pid\": \"GO: 0070988;GO: 0070988;GO_0070988;GO_0070988\", \"attributes\": [], \"id\": \"117\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Demethylation\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0070988\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"days to heading\", \"isPreferred\": \"true\"} ], \"elementOf\": \"T3: TO\", \"description\": \"Number of days required for the inflorescence (head\\/cob\\/panicle) to emerge from the flag leaf of a plant or a group of plants in a study.\", \"pid\": \"TO_0000137\", \"attributes\": [], \"id\": \"118\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"days to heading\", \"ofType\": \"Trait\", \"coaccessions\": [{ \"elementOf\": \"TO\", \"accession\": \"TO: 0000137\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"caryopsis fruit weight (exact)\", \"isPreferred\": \"false\"} , { \"name\": \"GRWT (exact)\", \"isPreferred\": \"false\"} , { \"name\": \"kernel weight (exact)\", \"isPreferred\": \"false\"} , { \"name\": \"grain weight\", \"isPreferred\": \"true\"} ], \"elementOf\": \"TO\", \"description\": \"A caryopsis fruit morphology trait (TO: 0001079) which is the weight of a caryopsis fruit (grain or kernel; 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\"TRAESCS3B02G452200\"} , { \"elementOf\": \"IWGSC_2.1\", \"accession\": \"TRAESCS3B03G1115700\"} ]} , { \"annotation\": \"PROTEIN_CODING\", \"conames\": [{ \"name\": \"DREB2C\", \"isPreferred\": \"false\"} , { \"name\": \"TRAESCS1B02G256000\", \"isPreferred\": \"false\"} ], \"elementOf\": \"DFW: ENSEMBL: KNET\", \"description\": \"\", \"pid\": \"TRAESCS1B02G256000\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"4565\"} , { \"attrname\": \"Chromosome\", \"value\": \"1B\"} , { \"attrname\": \"END\", \"value\": \"451135517\"} , { \"attrname\": \"BEGIN\", \"value\": \"451134276\"} ], \"id\": \"239\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"DREB2C\", \"ofType\": \"Gene\", \"coaccessions\": [{ \"elementOf\": \"WHEATEXP\", \"accession\": \"TRAESCS1B02G256000\"} , { \"elementOf\": \"IWGSC_2.1\", \"accession\": \"TRAESCS1B03G0722600\"} , { \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"TRAESCS1B02G256000\"} ]} , { \"annotation\": \"PROTEIN_CODING\", \"conames\": [{ \"name\": \"TRAESCS3B02G504900\", \"isPreferred\": \"false\"} ], \"elementOf\": \"DFW: ENSEMBL\", \"description\": \"\", \"pid\": \"TRAESCS3B02G504900\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"4565\"} , { \"attrname\": \"Chromosome\", \"value\": \"3B\"} , { \"attrname\": \"END\", \"value\": \"749148939\"} , { \"attrname\": \"BEGIN\", \"value\": \"749146613\"} ], \"id\": \"240\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"TRAESCS3B02G504900\", \"ofType\": \"Gene\", \"coaccessions\": [{ \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"TRAESCS3B02G504900\"} , { \"elementOf\": \"IWGSC_2.1\", \"accession\": \"TRAESCS3B03G1248400\"} , { \"elementOf\": \"WHEATEXP\", \"accession\": \"TRAESCS3B02G504900\"} ]} , { \"annotation\": \"PROTEIN_CODING\", \"conames\": [{ \"name\": \"TaABI3\", \"isPreferred\": \"true\"} , { \"name\": \"ABI3\", \"isPreferred\": \"true\"} , { \"name\": \"VP1\", \"isPreferred\": \"false\"} , { \"name\": \"TRAESCS3D02G412800\", \"isPreferred\": \"false\"} , { \"name\": \"SIS10\", \"isPreferred\": \"true\"} , { \"name\": \"TaSIS10\", \"isPreferred\": \"true\"} ], \"elementOf\": \"DFW: ENSEMBL: KNET\", \"description\": \"\", \"pid\": \"TRAESCS3D02G412800\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"TAXID\", \"value\": \"4565\"} , { \"attrname\": \"Chromosome\", \"value\": \"3D\"} , { \"attrname\": \"END\", \"value\": \"525473995\"} , { \"attrname\": \"BEGIN\", \"value\": \"525469559\"} ], \"id\": \"241\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"TaABI3\", \"ofType\": \"Gene\", \"coaccessions\": [{ \"elementOf\": \"IWGSC_2.1\", \"accession\": \"TRAESCS3D03G0906700\"} , { \"elementOf\": \"WHEATEXP\", \"accession\": \"TRAESCS3D02G412800\"} , { \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"TRAESCS3D02G412800\"} ]} , { \"annotation\": \"PROTEIN_CODING\", \"conames\": [{ \"name\": \"TaHSFA7B\", \"isPreferred\": \"true\"} , { \"name\": \"TaHSFA6A\", \"isPreferred\": \"true\"} , { \"name\": \"TaHSFA6B\", \"isPreferred\": \"true\"} , { \"name\": \"TaHSFA7A\", \"isPreferred\": \"true\"} , { \"name\": \"TRAESCS2D02G087400\", \"isPreferred\": \"false\"} , { \"name\": \"HSFA2B\", \"isPreferred\": \"false\"} , { \"name\": \"HSFA6B\", \"isPreferred\": \"true\"} , { \"name\": \"HSFA7B\", \"isPreferred\": \"true\"} , { \"name\": \"HSFA6A\", \"isPreferred\": \"true\"} , { \"name\": \"HSFA7A\", \"isPreferred\": \"true\"} ], \"elementOf\": \"DFW: ENSEMBL: KNET\", \"description\": \"\", \"pid\": \"TRAESCS2D02G087400\", \"attributes\": [{ \"attrname\": \"TAXID\", \"value\": \"4565\"} , { \"attrname\": \"Chromosome\", \"value\": \"2D\"} , { \"attrname\": \"END\", \"value\": \"37613873\"} , { \"attrname\": \"BEGIN\", \"value\": \"37608958\"} ], \"id\": \"242\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"TaHSFA6A\", \"ofType\": \"Gene\", \"coaccessions\": [{ \"elementOf\": \"WHEATEXP\", \"accession\": \"TRAESCS2D02G087400\"} , { \"elementOf\": \"IWGSC_2.1\", \"accession\": \"TRAESCS2D03G0174000\"} , { \"elementOf\": \"ENSEMBL-PLANTS\", \"accession\": \"TRAESCS2D02G087400\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"seed coat color\", \"isPreferred\": \"true\"} ], \"elementOf\": \"TO\", \"description\": \"A seed coat morphology trait (TO: 0000838) which is the color of the seed coat (PO: 0009088).\", \"pid\": \"TO_0000190\", \"attributes\": [], \"id\": \"243\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"seed coat color\", \"ofType\": \"Trait\", \"coaccessions\": [{ \"elementOf\": \"TO\", \"accession\": \"TO: 0000190\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 24279988\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: TAIR\", \"description\": \"\", \"pid\": \"24279988\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Journal of integrative plant biology\"} , { \"attrname\": \"Chemical\", \"value\": \"[72S9A8J5GW Abscisic Acid,  EC 2.3.2.27 Ubiquitin-Protein Ligases]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2014\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Functional analyses of an E3 ligase gene AIP2 from wheat in Arabidopsis revealed its roles in seed germination and pre-harvest sprouting.\"} , { \"attrname\": \"Abstract\", \"value\": \"Pre-harvest sprouting (PHS) seriously affects wheat yield and quality of the grain. ABI3 is a key factor in the activation of seed development and repression of germination in Arabidopsis. An ABI3-interacting protein (AIP2) could polyubiquitinate ABI3,  impair seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> and promote seed germination in Arabidopsis. In this study,  two wheat AIP2 genes,  TaAIP2A and TaAIP2B,  were isolated. Subcellular localization assay and yeast two-hybrid analysis revealed that TaAIP2A and TaAIP2B may function through interaction with wheat Viviporous-1 (TaVp1). The transcripts TaAIP2A and TaAIP2B were more abundant in wheat PHS susceptible cultivars than that of resistant ones,  and decreased gradually following seed development. Expression of TaAIP2A and TaAIP2B in Arabidopsis aip2-1 mutant lines resulted in earlier flowering,  promotion of seed germination,  and reduced ABA sensitivity,  respectively,  somehow mimicking the phenotype of the wild type,  with TaAIP2B having a stronger role in these aspects. Furthermore,  the expression of upstream genes ABI1 and ABI2 were upregulated,  whereas that of downstream genes ABI3 and ABI5 were downregulated in both TaAIP2A and TaAIP2B complemented lines upon ABA treatment. These results suggested that wheat AIP2s could negatively regulate the ABA signaling pathway and play important roles in seed germination,  and thus wheat PHS resistance finally. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Ubiquitin-Protein Ligases,  Triticum,  Signal Transduction,  Arabidopsis,  Germination,  Gene Expression Regulation,  Plant,  Abscisic Acid]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Dong-Yao Gao,  Zhao-Shi Xu,  Yi He,  Yong-Wei Sun,  You-Zhi Ma,  Lan-Qin Xia]\"} ], \"id\": \"244\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 24279988\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"24279988\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 18506099\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"18506099\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Genes & genetic systems\"} , { \"attrname\": \"Chemical\", \"value\": \"[Em protein,  Triticum aestivum,  Plant Proteins,  Transcription Factors,  EC 3.2.1.1 alpha-Amylases]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2008\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Structural and functional properties of Viviparous1 genes in dormant wheat.\"} , { \"attrname\": \"Abstract\", \"value\": \"Viviparous 1 (Vp1) of maize is known to encode a transcription factor VP1 that controls seed germination. Hexaploid wheat possesses three Vp1 homoeologues (TaVp1):  TaVp-A1,  TaVp-B1 and TaVp-D1. In this study,  we attempted to characterize the molecular properties of TaVp1 in a highly dormant wheat cultivar,  Minamino-komugi (Minamino). The seeds of Minamino showed much higher sensitivity to the inhibitory effect of ABA on germination than those of non-dormant cultivars,  Sanin-1 and Tozan-18. The sequence analyses of cDNAs also revealed that some of TaVp-A1 transcripts and TaVp-D1 transcripts were spliced incorrectly,  presumably resulting in production of truncated or deleted proteins. Most TaVp-B1 transcripts were spliced correctly,  but some had an additional 3-bp (AAG) insertion in the B3 domain,  which may not affect their function. RT-PCR analyses showed that TaVp1 was highly expressed in Minamino embryos in maturing seeds but much less in roots and leaves of seedlings. The level of TaVp1 mRNA was high when the embryos were treated with ABA but markedly decreased in water-imbibed mature embryos whose <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> had been broken. Expression analyses of the individual homoeologues showed that the level of TaVp-A1 transcripts was highest in embryos of DAP 20 but much lower in the matured embryos. TaVp-B1 was highly expressed in developing and maturing seed embryos,  while TaVp-D1 mRNA existed at lower levels in developing embryos but increased as the seeds were matured. These results suggest that the majority of TaVp1,  especially TaVp-B1,  are properly spliced and may function as a transcription factor playing an important role on <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> in Minamino. By employing an efficient transient expression system using diploid wheat seeds,  we confirmed the dual function of TaVP-B1:  the activation of Em expression and the repression of alpha-amylase expression. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Gene Expression,  Sequence Alignment,  Triticum,  Seeds,  Alternative Splicing,  alpha-Amylases,  Base Sequence,  Germination,  Transcriptional Activation,  Molecular Sequence Data,  Plant Proteins,  Transcription Factors]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Shigeko Utsugi,  Shingo Nakamura,  Kazuhiko Noda,  Masahiko Maekawa]\"} ], \"id\": \"245\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 18506099\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"18506099\"} ]} , { \"annotation\": \"[NUCLEOTIDE SEQUENCE]\", \"conames\": [{ \"name\": \"PMID: 11413225\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: UNIPROTKB\", \"description\": \"\", \"pid\": \"11413225\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Journal of experimental botany\"} , { \"attrname\": \"Chemical\", \"value\": \"[Trans-Activators,  Plant Proteins,  DNA,  Complementary]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2001\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Isolation of a VP1 homologue from wheat and analysis of its expression in embryos of dormant and non-dormant cultivars.\"} , { \"attrname\": \"Abstract\", \"value\": \"A VP (Viviparous) 1 homologous gene has been cloned from wheat (Triticum aestivumL.). Its expression level was examined in the mature embryos of dormant and non-dormant cultivars. The level of expression was positively correlated with the level of seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> and embryo sensitivity to abscisic acid (ABA). \"} , { \"attrname\": \"MeSH\", \"value\": \"[Sequence Homology,  Amino Acid,  Amino Acid Sequence,  Triticum,  Seeds,  Trans-Activators,  Gene Expression Regulation,  Plant,  Molecular Sequence Data,  Plant Proteins,  DNA,  Complementary]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[S Nakamura,  T Toyama]\"} , { \"attrname\": \"PUB_TYPE\", \"value\": \"[NUCLEOTIDE SEQUENCE]\"} ], \"id\": \"246\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 11413225\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"11413225\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 15714317\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"15714317\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Functional & integrative genomics\"} , { \"attrname\": \"Chemical\", \"value\": \"[RNA,  Messenger]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2005\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Alteration of the embryo transcriptome of hexaploid winter wheat (Triticum aestivum cv. Mercia) during maturation and germination.\"} , { \"attrname\": \"Abstract\", \"value\": \"Grain <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> and germination are areas of biology that are of considerable interest to the cereal community. We have used a 9, 155-feature wheat unigene cDNA microarray resource to investigate changes in the wheat embryo transcriptome during late grain development and maturation and during the first 48 h of postimbibition germination. In the embryo 392 mRNAs accumulated by twofold or greater over the time course from 21 days postanthesis (dpa) to 40 dpa and on through 1 and 2 days postgermination. These included mRNAs encoding proteins involved in amino acid biosynthesis and metabolism,  cell division and subsequent cell development,  signal transduction,  lipid metabolism,  energy production,  protein turnover,  respiration,  initiation of transcription,  initiation of translation and ribosomal composition. A number of mRNAs encoding proteins of unknown function also accumulated over the time course. Conversely 163 sequences showed decreases of twofold or greater over the time course. A small number of mRNAs also showed rapid accumulation specifically during the first 48 h of germination. We also examined alterations in the accumulation of transcripts encoding proteins involved in abscisic acid signalling. Thus,  we describe changes in the level of transcripts encoding wheat Viviparous 1 (Vp1) and other interacting proteins. Interestingly,  the transcript encoding wheat Viviparous-interacting protein 1 showed a pattern of accumulation that correlates inversely with germination. Our data suggests that the majority of the transcripts required for germination accumulate in the embryo prior to germination and we discuss the implications of these findings with regard to manipulation of germination in wheat. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Polyploidy,  Triticum,  Oligonucleotide Array Sequence Analysis,  Germination,  Computational Biology,  Transcription,  Genetic,  Reverse Transcriptase Polymerase Chain Reaction,  RNA,  Messenger]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Ian D Wilson,  Gary L A Barker,  Chungui Lu,  Jane A Coghill,  Richard W Beswick,  John R Lenton,  Keith J Edwards]\"} ], \"id\": \"247\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 15714317\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"15714317\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 33249604\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"33249604\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Plant,  cell  environment\"} , { \"attrname\": \"Chemical\", \"value\": \"[Gibberellins,  72S9A8J5GW Abscisic Acid,  Plant Proteins]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2021\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"A shift in abscisic acid\\/gibberellin balance underlies retention of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> induced by seed development temperature.\"} , { \"attrname\": \"Abstract\", \"value\": \"Through a combination of physiological,  pharmacological,  molecular and targeted metabolomics approaches,  we showed that retention of wheat (Triticum aestivum L.) seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> levels induced by low and high seed development temperatures during post-desiccation phases is associated with modulation of gibberellin (GA) level and seed responsiveness to abscisic acid (ABA) and GA via expression of TaABI5 and TaGAMYB,  respectively. <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span> retention during imbibition,  however,  is associated with modulations of both ABA level and responsiveness via expression of specific ABA metabolism (TaNCED2 and TaCYP707A1) and signalling (TaPYL2,  TaSnRK2,  TaABI3,  TaABI4 and TaABI5) genes,  and alterations of GA levels and responsiveness through expression of specific GA biosynthesis (TaGA20ox1,  TaGA20ox2 and TaGA3ox2) and signalling (TaGID1 and TaGID2) genes,  respectively. Expression patterns of GA signalling genes,  TaRHT1 and TaGAMYB,  lacked positive correlation with that of GA regulated genes and <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> level observed in seeds developed at the two temperatures,  implying their regulation at post-transcriptional level. Our results overall implicate that a shift in ABA\\/GA balance underlies retention of <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> levels induced by seed development temperature during post-desiccation and imbibition phases. Consistently,  genes regulated by ABA and GA during imbibition overlapped with those differentially expressed between imbibed seeds developed at the two temperatures and mediate different biological functions. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Temperature,  Triticum,  Seeds,  Signal Transduction,  Gibberellins,  Germination,  Gene Expression Regulation,  Plant,  Plant <span style=\\\"background-color: #c9daac\\\"><b>Dormancy<\\/b><\\/span>,  Abscisic Acid,  Plant Proteins]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Pham A Tuan,  Tran-Nguyen Nguyen,  Mark C Jordan,  Belay T Ayele]\"} ], \"id\": \"248\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 33249604\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"33249604\"} ]} , { \"annotation\": \"[NUCLEOTIDE SEQUENCE]\", \"conames\": [{ \"name\": \"PMID: 12119408\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: UNIPROTKB\", \"description\": \"\", \"pid\": \"12119408\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Proceedings of the National Academy of Sciences of the United States of America\"} , { \"attrname\": \"Chemical\", \"value\": \"[RNA,  Plant,  Trans-Activators,  Plant Proteins,  Transcription Factors,  DNA Primers,  DNA-Binding Proteins]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2002\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Transcripts of Vp-1 homeologues are misspliced in modern wheat and ancestral species.\"} , { \"attrname\": \"Abstract\", \"value\": \"The maize (Zea mays) Viviparous 1 (Vp1) transcription factor has been shown previously to be a major regulator of seed development,  simultaneously activating embryo maturation and repressing germination. Hexaploid bread wheat (Triticum aestivum) caryopses are characterized by relatively weak embryo <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> and are susceptible to preharvest sprouting (PHS),  a phenomenon that is phenotypically similar to the maize vp1 mutation. Analysis of Vp-1 transcript structure in wheat embryos during grain development showed that each homeologue produces cytoplasmic mRNAs of different sizes. The majority of transcripts are spliced incorrectly,  contain insertions of intron sequences or deletions of coding region,  and do not have the capacity to encode full-length proteins. Several VP-1-related lower molecular weight protein species were present in wheat embryo nuclei. Embryos of a closely related tetraploid species (Triticum turgidum) and ancestral diploids also contained misspliced Vp-1 transcripts that were structurally similar or identical to those found in modern hexaploid wheat,  which suggests that compromised structure and expression of Vp-1 transcripts in modern wheat are inherited from ancestral species. Developing embryos from transgenic wheat grains expressing the Avena fatua Vp1 gene showed enhanced responsiveness to applied abscisic acid compared with the control. In addition,  ripening ears of transgenic plants were less susceptible to PHS. Our results suggest that missplicing of wheat Vp-1 genes contributes to susceptibility to PHS in modern hexaploid wheat varieties and identifies a possible route to increase resistance to this environmentally triggered disorder. \"} , { \"attrname\": \"MeSH\", \"value\": \"[RNA,  Plant,  Seeds,  Alternative Splicing,  Trans-Activators,  Molecular Sequence Data,  Phylogeny,  DNA Primers,  Triticum,  Base Sequence,  Plants,  Genetically Modified,  Transcription,  Genetic,  Plant Proteins,  Transcription Factors,  DNA-Binding Proteins]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[Rowan S McKibbin,  Mark D Wilkinson,  Paul C Bailey,  John E Flintham,  Lucy M Andrew,  Paul A Lazzeri,  Mike D Gale,  John R Lenton,  Michael J Holdsworth]\"} , { \"attrname\": \"PUB_TYPE\", \"value\": \"[NUCLEOTIDE SEQUENCE]\"} ], \"id\": \"249\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 12119408\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"DOI\", \"accession\": \"10.1073\\/PNAS.152318599\"} , { \"elementOf\": \"NLM\", \"accession\": \"12119408\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 10527428\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM: TAIR\", \"description\": \"\", \"pid\": \"10527428\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"Plant molecular biology\"} , { \"attrname\": \"Chemical\", \"value\": \"[Antigens,  Plant,  Arabidopsis Proteins,  Protein Isoforms,  Protein Precursors,  ABI3 protein,  Arabidopsis,  Em protein,  Triticum aestivum,  72S9A8J5GW Abscisic Acid,  Plant Proteins,  Transcription Factors,  2S Albumins,  Plant,  RNA,  Messenger,  DNA,  Plant]\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"1999\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Importance of the B2 domain of the Arabidopsis ABI3 protein for Em and 2S albumin gene regulation.\"} , { \"attrname\": \"Abstract\", \"value\": \"Genetic and molecular studies have shown that the Arabidopsis ABSCISIC ACID-INSENSITIVE3 (ABI3) protein plays a prominent role in the control of seed maturation. The ABI3 protein and its orthologues from various other plant species share four domains of high sequence identity,  including three basic domains designated as B1,  B2 and B3. The leaky abi3-1 mutation is a single amino acid substitution within the B3 domain. A new abi3 allele,  abi3-7,  was generated by mutagenizing abi3-1 seeds. The abi3-7 line contains,  in addition to the abi3-1 mutation,  a point mutation that converts residue Ala-458 into Thr within the B2 domain of the ABI3 protein. This Ala residue is absolutely conserved in all known ABI3 orthologues. Abi3-7 seeds display reductions in <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> and in sensitivity to abscisic acid which are intermediate between those of the leaky abi3-1 and of the severe abi3-4 and abi3-5 mutants. Accumulation and distribution of At2S1 and At2S2 albumin mRNA as well as of AtEm1 and AtEm6 late embryogenesis-abundant proteins and mRNA have been analyzed. Both At2S1 and At2S2 mRNA are reduced in abi3-7,  but distribution of At2S2 is spatially restricted. Accumulation of AtEm6 protein is more sensitive to abi3-7 mutation than AtEm1. However both mRNAs are considerably reduced in this mutant. Their distribution is also differentially affected. These results provide genetic evidence for the importance of the conserved B2 domain for ABI3 function in vivo. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Amino Acid Sequence,  Antigens,  Plant,  Seeds,  Arabidopsis,  Genes,  Plant,  Germination,  Molecular Sequence Data,  Abscisic Acid,  DNA,  Plant,  Sequence Homology,  Amino Acid,  Blotting,  Northern,  Arabidopsis Proteins,  In Situ Hybridization,  Mutagenesis,  Gene Expression Regulation,  Developmental,  Protein Isoforms,  Alleles,  Gene Expression Regulation,  Plant,  Protein Precursors,  Plant Proteins,  Transcription Factors,  2S Albumins,  Plant,  Binding Sites,  RNA,  Messenger]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[N Bies-Etheve,  A da Silva Conceicao,  J Giraudat,  M Koornneef,  K Lon-Kloosterziel,  C Valon,  M Delseny]\"} ], \"id\": \"250\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 10527428\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"10527428\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"PMID: 12750793\", \"isPreferred\": \"true\"} ], \"elementOf\": \"NLM\", \"description\": \"\", \"pid\": \"12750793\", \"attributes\": [{ \"attrname\": \"JOURNAL_REF\", \"value\": \"TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"YEAR\", \"value\": \"2003\"} , { \"attrname\": \"size\", \"value\": \"50\"} , { \"attrname\": \"AbstractHeader\", \"value\": \"Mapping QTLs for seed dormancy and the Vp1 homologue on chromosome 3A in wheat.\"} , { \"attrname\": \"Abstract\", \"value\": \"A major component of the observed genetic variation for pre-harvest sprouting in wheat (Triticum aestivum L.) appears to be the level of seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. Group 3 chromosomes have received attention as carrying the R genes for seed-coat color and the taVp1 genes that are orthologous to the maize Vp1 gene which encode a <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>-related transcription factor. The objectives of the present study were to map quantitative trait loci (QTLs) for seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> on chromosome 3A and to investigate an association between taVp1 or R-A1 and the QTLs detected. A mapping population in the form of recombinant inbred lines developed from the cross between the highly dormant Zenkoujikomugi (Zen) and Chinese Spring (CS) was utilized. Nineteen marker loci,  including taVp1,  were mapped on chromosome 3A. The taVp1 locus was located in the middle of the long arm,  about 85 cM from the centromere. The population was evaluated in duplicate by growing them under controlled environment conditions. Two QTLs for seed <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>,  designated as QPhs.ocs-3A.1 and QPhs.ocs-3A.2,  were identified on the short and long arms,  respectively. QPhs.ocs-1 explained 23-38% of the phenotypic variation and the Zen allele had a striking effect on maintaining <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>. QPhs.ocs-2,  with a minor effect,  was detectable only at the <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span>-breaking stage. Although QPhs.ocs-2 was loosely linked to taVp1 by around 50 cM,  they are clearly distinct genes. Zen and CS carry the white R-A1a allele,  and no QTL effect was detected in the vicinity region of R-A1. Hence it was concluded that the high <span style=\\\"background-color: #c9daac\\\"><b>dormancy<\\/b><\\/span> associated with chromosome 3A of Zen is ascribable to QPhs.ocs-1 on the short arm but is not due to the direct contribution of either the taVp1 or R-A1 locus. \"} , { \"attrname\": \"MeSH\", \"value\": \"[Triticum,  Genes,  Plant,  Chromosomes,  Plant,  Quantitative Trait Loci]\"} , { \"attrname\": \"AUTHORS\", \"value\": \"[M Osa,  K Kato,  M Mori,  C Shindo,  A Torada,  H Miura]\"} ], \"id\": \"251\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"PMID: 12750793\", \"ofType\": \"Publication\", \"coaccessions\": [{ \"elementOf\": \"NLM\", \"accession\": \"12750793\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"Cold Acclimation\", \"isPreferred\": \"true\"} , { \"name\": \"GO: 0009631\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"Any process that increases freezing tolerance of an organism in response to low,  nonfreezing temperatures.\", \"pid\": \"GO: 0009631;GO: 0009631;GO_0009631;GO_0009631\", \"attributes\": [], \"id\": \"252\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Cold Acclimation\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0009631\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"jasmonic acid formation\", \"isPreferred\": \"false\"} , { \"name\": \"GO: 0009695\", \"isPreferred\": \"false\"} , { \"name\": \"jasmonic acid synthesis\", \"isPreferred\": \"false\"} , { \"name\": \"Jasmonic Acid Biosynthetic Process\", \"isPreferred\": \"true\"} , { \"name\": \"jasmonic acid anabolism\", \"isPreferred\": \"false\"} , { \"name\": \"jasmonic acid biosynthesis\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: DFW: GO: UNIPROTKB\", \"description\": \"The chemical reactions and pathways resulting in the formation of jasmonic acid,  a fatty acid derivative.\", \"pid\": \"GO: 0009695;GO: 0009695;GO_0009695;GO_0009695\", \"attributes\": [], \"id\": \"253\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"Jasmonic Acid Biosynthetic Process\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ \"elementOf\": \"GO\", \"accession\": \"GO: 0009695\"} ]} , { \"annotation\": \"\", \"conames\": [{ \"name\": \"peptidolysis\", \"isPreferred\": \"false\"} , { \"name\": \"Proteolysis\", \"isPreferred\": \"true\"} , { \"name\": \"GO: 0006508\", \"isPreferred\": \"false\"} ], \"elementOf\": \"AGI_LocusCode: GO: UNIPROTKB\", \"description\": \"The hydrolysis of proteins into smaller polypeptides and\\/or amino acids by cleavage of their peptide bonds.\", \"pid\": \"GO: 0006508;GO: 0006508;GO_0006508;GO_0006508\", \"attributes\": [], \"id\": \"254\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"value\": \"peptidolysis\", \"ofType\": \"Biological_Process\", \"coaccessions\": [{ 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\"1876.5792676098963\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"27162497,  35698038,  35971881,  35124171,  31988624,  21896881,  24069187\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"511.72799549966294\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We found that CACTAs have inserted into many agronomically important genes,  such as seed dormancy gene TaMFT and vernalization gene TaVrn1,  indicating the important role of CACTAs in modern wheat adaptation.  ,  These findings suggest that TaMFT-A1 may invoke different mechanisms for controlling seed dormancy\\/germination among winter wheat cultivars.  ,  Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.,  In this study,  the TaMFT (3A,  3B1,  3B2,  3D),  TaMKK3-4A,  and TaVP1-3B genes were assessed for association with PHS in a double-haploid line (DHL) hard red winter wheat population derived from a BC1 cross between the cultivars Loma and Warhorse,  where Loma was the recurrent and PHS susceptible parent.,  QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.,  Mapping analysis showed that MFT on chromosome 3A (MFT-3A) colocalized with the seed dormancy quantitative trait locus (QTL) QPhs.ocs-3A.1.]\"} ], \"id\": \"e32\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"2\", \"fromConcept\": \"34\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"3\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"171.86874515445652\"} , { \"attrname\": \"PMID\", \"value\": \"24932489,  33362967,  21896881\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"76.86510374574391\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Detailed expression analysis showed that the mRNA level of GmMFT increased with seed development but declined during seed germination.]\"} ], \"id\": \"e33\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"2\", \"fromConcept\": \"35\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"800.200851562513\"} , { \"attrname\": \"PMID\", \"value\": \"35790923,  24069187\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"524.9402428538087\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars.]\"} ], \"id\": \"e34\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"2\", \"fromConcept\": \"36\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"3\"} , { \"attrname\": \"CoSenNum\", \"value\": \"5\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"1267.6951642735003\"} , { \"attrname\": \"PMID\", \"value\": \"24932489,  33362967,  24069187\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"842.497691464232\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[All these evidences suggest that GmMFT may be a negative regulator of seed germination.  ,  Recent studies in both Arabidopsis and wheat have uncovered a new role of MOTHER OF FT AND TFL1 (MFT) in seed germination.,  Detailed expression analysis showed that the mRNA level of GmMFT increased with seed development but declined during seed germination.,  Ectopic expression of GmMFT CDS in Arabidopsis moderately inhibited seed germination.,  TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.]\"} ], \"id\": \"e35\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"2\", \"fromConcept\": \"37\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"4\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"556.8978321142631\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"27162497,  31988624\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"360.17540043431654\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.]\"} ], \"id\": \"e36\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"2\", \"fromConcept\": \"38\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"65.75624309740124\"} , { \"attrname\": \"PMID\", \"value\": \"31988624\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"65.75624309740124\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Response of embryo-half seeds to exogenous abscisic acid (ABA) indicates that ABA sensitivity is correlated with whole-seed germinability,  which can be explained in part by genotypes of MOTHER OF FT AND TFL (MFT) allele modulating ABA signaling of wheat seeds.]\"} ], \"id\": \"e37\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"39\", \"fromConcept\": \"2\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"15.68675708770752\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In a complementation analysis,  high levels of MFT expression were correlated with a low germination index in T1 seeds.,  MFT-3A expression levels in a dormant cultivar used for the detection of the QTL were higher after physiological maturity; this increased expression correlated with a single nucleotide polymorphism in the promoter region.,  Furthermore,  precocious germination of isolated immature embryos was suppressed by transient introduction of MFT driven by the maize (Zea mays) ubiquitin promoter.,  Taken together,  these results suggest that MFT plays an important role in the regulation of germination in wheat.  ,  In situ hybridization analysis indicated that MFT was exclusively expressed in the scutellum and coleorhiza.,  Mapping analysis showed that MFT on chromosome 3A (MFT-3A) colocalized with the seed dormancy quantitative trait locus (QTL) QPhs.ocs-3A.1.,  We found that a wheat homolog of MOTHER OF FT AND TFL1 (MFT) was upregulated after physiological maturity in dormant seeds grown at the lower temperature.]\"} ], \"id\": \"e38\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"40\", \"fromConcept\": \"2\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.605947494506836\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Comparative analyses of the genetic intervals of identified QTLs with that of already identified and cloned PHS resistance gene intervals using IWGSC RefSeq v2.0 identified MFT-A1b (in QTL interval QPhs.lrdc-3A.1) and AGO802A (in QTL interval QPhs.lrdc-3A.2) on chromosome 3A,  MFT-3B-1 (in QTL interval QPhs.lrdc-3B.1) on chromosome 3B,  and AGO802D,  HUB1,  TaVp1-D1 (in QTL interval QPhs.lrdc-3D.1) and TaMyb10-D1 (in QTL interval QPhs.lrdc-3D.2) on chromosome 3D.]\"} ], \"id\": \"e39\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"41\", \"fromConcept\": \"2\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"42.871280670166016\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Previous research has shown TaMFT-3A as having a large impact on PHS resistance.,  Markers for both TaMFT-3A and TaMFT-3B2 should be used in selecting for increased wheat dormancy and PHS resistance.  ,  In this study,  the TaMFT (3A,  3B1,  3B2,  3D),  TaMKK3-4A,  and TaVP1-3B genes were assessed for association with PHS in a double-haploid line (DHL) hard red winter wheat population derived from a BC1 cross between the cultivars Loma and Warhorse,  where Loma was the recurrent and PHS susceptible parent.,  The PHS variation was associated with the TaMFT-A and the B2 homeolog with Loma carrying mutant forms of each gene.,  In the current study,  the TaMFT-3A and TaMFT-3B2 alleles each explained 14% of observed PHS variation.,  No sequence variation between Loma and Warhorse was detected in the exons of the TaMFT-B1 and D homeologs.,  TAMFT-3A and TAMFT-3B2 homeologs are associated with wheat preharvest sprouting.]\"} ], \"id\": \"e40\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"42\", \"fromConcept\": \"2\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"34.82606887817383\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[These findings suggest that TaMFT-A1 may invoke different mechanisms for controlling seed dormancy\\/germination among winter wheat cultivars.  ,  Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  However,  allelic variation in TaMFT-A1 between the two winter wheat cultivars differed from that was observed in spring wheat cultivars.,  TaMFT-A1 transcript levels were up-regulated by high temperature but down-regulated by low temperature or seed storage time.,  TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.,  The Jagger TaMFT-A1 allele is a novel haplotype and appears extensively in winter wheat cultivars.,  There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars.]\"} ], \"id\": \"e41\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"43\", \"fromConcept\": \"2\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.558441162109375\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Phylogenetic analysis classified the PEBP genes into four subfamilies (PEBP-like,  MFT-like,  TFL-like and FT-like); the PEBP-like subfamily was identified as a new subfamily with genes in this subfamily were conserved in plants.]\"} ], \"id\": \"e42\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"44\", \"fromConcept\": \"2\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.334551811218262\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.]\"} ], \"id\": \"e43\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"45\", \"fromConcept\": \"2\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"12.827485084533691\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We used a DNA marker to detect the 'Zenkoujikomugi'-type (Zen-type) SNP and examined the genotype of MFT-3A in Japanese wheat varieties,  and we found that 169 of 324 varieties carry the Zen-type SNP.,  In the wheat (Triticum aestivum L.) cultivar 'Zenkoujikomugi',  a single nucleotide polymorphism (SNP) in the promoter of MOTHER OF FT AND TFL1 on chromosome 3A (MFT-3A) causes an increase in the level of gene expression,  resulting in strong grain dormancy.,  To examine the relationship between MFT-3A genotype and grain dormancy,  we performed a germination assay in three wheat-growing seasons.]\"} ], \"id\": \"e44\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"46\", \"fromConcept\": \"2\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.101876258850098\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Response of embryo-half seeds to exogenous abscisic acid (ABA) indicates that ABA sensitivity is correlated with whole-seed germinability,  which can be explained in part by genotypes of MOTHER OF FT AND TFL (MFT) allele modulating ABA signaling of wheat seeds.]\"} ], \"id\": \"e45\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"47\", \"fromConcept\": \"2\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.334551811218262\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We found that CACTAs have inserted into many agronomically important genes,  such as seed dormancy gene TaMFT and vernalization gene TaVrn1,  indicating the important role of CACTAs in modern wheat adaptation.  ]\"} ], \"id\": \"e46\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"48\", \"fromConcept\": \"2\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.746791839599609\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.]\"} ], \"id\": \"e47\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"1\", \"fromConcept\": \"49\", \"attributes\": [{ \"attrname\": \"%Identity_target\", \"value\": \"82.3864\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"%Identity_other\", \"value\": \"80.5556\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"METHOD\", \"value\": \"EnsemblCompara\"} , { \"attrname\": \"Homology_type\", \"value\": \"ortholog_one2one\"} ], \"id\": \"e48\", \"contexts\": { } , \"evidences\": [\"EnsemblCompara\", \"Imported from database\"], \"ofType\": \"orthologue\"} , { \"toConcept\": \"50\", \"fromConcept\": \"1\", \"attributes\": [{ \"attrname\": \"%Identity_target\", \"value\": \"62.7778\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"%Identity_other\", \"value\": \"65.3179\"} , { \"attrname\": \"size\", \"value\": 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in spring wheat cultivars.]\"} ], \"id\": \"e68\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"34\", \"fromConcept\": \"3\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"68.98936846721062\"} , { \"attrname\": \"PMID\", \"value\": \"24932489\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"68.98936846721062\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Detailed expression analysis showed that the mRNA level of GmMFT increased with seed development but declined during seed germination.]\"} ], \"id\": \"e69\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"33\", \"fromConcept\": \"3\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"3\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { 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\"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.334551811218262\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We found that CACTAs have inserted into many agronomically important genes,  such as seed dormancy gene TaMFT and vernalization gene TaVrn1,  indicating the important role of CACTAs in modern wheat adaptation.  ]\"} ], \"id\": \"e71\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"48\", \"fromConcept\": \"3\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.746791839599609\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.]\"} ], \"id\": \"e72\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"46\", \"fromConcept\": \"3\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.101876258850098\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Response of embryo-half seeds to exogenous abscisic acid (ABA) indicates that ABA sensitivity is correlated with whole-seed germinability,  which can be explained in part by genotypes of MOTHER OF FT AND TFL (MFT) allele modulating ABA signaling of wheat seeds.]\"} ], \"id\": \"e73\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"43\", \"fromConcept\": \"3\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.558441162109375\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Phylogenetic analysis classified the PEBP genes into four subfamilies (PEBP-like,  MFT-like,  TFL-like and FT-like); the PEBP-like subfamily was identified as a new subfamily with genes in this subfamily were conserved in plants.]\"} ], \"id\": \"e74\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"45\", \"fromConcept\": \"3\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"12.827485084533691\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We used a DNA marker to detect the 'Zenkoujikomugi'-type (Zen-type) SNP and examined the genotype of MFT-3A in Japanese wheat varieties,  and we found that 169 of 324 varieties carry the Zen-type SNP.,  In the wheat (Triticum aestivum L.) cultivar 'Zenkoujikomugi',  a single nucleotide polymorphism (SNP) in the promoter of MOTHER OF FT AND TFL1 on chromosome 3A (MFT-3A) causes an increase in the level of gene expression,  resulting in strong grain dormancy.,  To examine the relationship between MFT-3A genotype and grain dormancy,  we performed a germination assay in three wheat-growing seasons.]\"} ], \"id\": \"e75\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"42\", \"fromConcept\": \"3\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"34.82606887817383\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[These findings suggest that TaMFT-A1 may invoke different mechanisms for controlling seed dormancy\\/germination among winter wheat cultivars.  ,  Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  However,  allelic variation in TaMFT-A1 between the two winter wheat cultivars differed from that was observed in spring wheat cultivars.,  TaMFT-A1 transcript levels were up-regulated by high temperature but down-regulated by low temperature or seed storage time.,  TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.,  The Jagger TaMFT-A1 allele is a novel haplotype and appears extensively in winter wheat cultivars.,  There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars.]\"} ], \"id\": \"e76\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"41\", \"fromConcept\": \"3\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { 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with wheat preharvest sprouting.]\"} ], \"id\": \"e77\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"40\", \"fromConcept\": \"3\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.605947494506836\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Comparative analyses of the genetic intervals of identified QTLs with that of already identified and cloned PHS resistance gene intervals using IWGSC RefSeq v2.0 identified MFT-A1b (in QTL interval QPhs.lrdc-3A.1) and AGO802A (in QTL interval QPhs.lrdc-3A.2) on chromosome 3A,  MFT-3B-1 (in QTL interval QPhs.lrdc-3B.1) on chromosome 3B,  and AGO802D,  HUB1,  TaVp1-D1 (in QTL interval QPhs.lrdc-3D.1) and TaMyb10-D1 (in QTL interval QPhs.lrdc-3D.2) on chromosome 3D.]\"} ], \"id\": \"e78\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"44\", \"fromConcept\": \"3\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.334551811218262\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.]\"} ], \"id\": \"e79\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"39\", \"fromConcept\": \"3\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"15.68675708770752\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In a complementation analysis,  high levels of MFT expression were correlated with a low germination index in T1 seeds.,  MFT-3A expression levels in a dormant cultivar used for the detection of the QTL were higher after physiological maturity; this increased expression correlated with a single nucleotide polymorphism in the promoter region.,  Furthermore,  precocious germination of isolated immature embryos was suppressed by transient introduction of MFT driven by the maize (Zea mays) ubiquitin promoter.,  Taken together,  these results suggest that MFT plays an important role in the regulation of germination in wheat.  ,  In situ hybridization analysis indicated that MFT was exclusively expressed in the scutellum and coleorhiza.,  Mapping analysis showed that MFT on chromosome 3A (MFT-3A) colocalized with the seed dormancy quantitative trait locus (QTL) QPhs.ocs-3A.1.,  We found that a wheat homolog of MOTHER OF FT AND TFL1 (MFT) was upregulated after physiological maturity in dormant seeds grown at the lower temperature.]\"} ], \"id\": \"e80\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"33\", \"fromConcept\": \"4\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"4\"} , { \"attrname\": \"CoSenNum\", \"value\": \"3\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"668.1558792744536\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"27162497,  35698038,  35971881,  35124171\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"422.90530377243704\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We found that CACTAs have inserted into many agronomically important genes,  such as seed dormancy gene TaMFT and vernalization gene TaVrn1,  indicating the important role of CACTAs in modern wheat adaptation.  ,  The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.,  QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.]\"} ], \"id\": \"e81\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"44\", \"fromConcept\": \"4\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.334551811218262\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.]\"} ], \"id\": \"e82\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"46\", \"fromConcept\": \"4\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.101876258850098\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Response of embryo-half seeds to exogenous abscisic acid (ABA) indicates that ABA sensitivity is correlated with whole-seed germinability,  which can be explained in part by genotypes of MOTHER OF FT AND TFL (MFT) allele modulating ABA signaling of wheat seeds.]\"} ], \"id\": \"e83\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"48\", \"fromConcept\": \"4\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.746791839599609\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.]\"} ], \"id\": \"e84\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"47\", \"fromConcept\": \"4\", \"attributes\": [{ \"attrname\": 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the wheat (Triticum aestivum L.) cultivar 'Zenkoujikomugi',  a single nucleotide polymorphism (SNP) in the promoter of MOTHER OF FT AND TFL1 on chromosome 3A (MFT-3A) causes an increase in the level of gene expression,  resulting in strong grain dormancy.,  To examine the relationship between MFT-3A genotype and grain dormancy,  we performed a germination assay in three wheat-growing seasons.]\"} ], \"id\": \"e86\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"40\", \"fromConcept\": \"4\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.605947494506836\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Comparative analyses of the genetic intervals of identified QTLs with that of already identified and cloned PHS resistance gene intervals using IWGSC RefSeq v2.0 identified MFT-A1b (in QTL interval QPhs.lrdc-3A.1) and AGO802A (in QTL interval QPhs.lrdc-3A.2) on chromosome 3A,  MFT-3B-1 (in QTL interval QPhs.lrdc-3B.1) on chromosome 3B,  and AGO802D,  HUB1,  TaVp1-D1 (in QTL interval QPhs.lrdc-3D.1) and TaMyb10-D1 (in QTL interval QPhs.lrdc-3D.2) on chromosome 3D.]\"} ], \"id\": \"e87\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"39\", \"fromConcept\": \"4\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"15.68675708770752\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In a complementation analysis,  high levels of MFT expression were correlated with a low germination index in T1 seeds.,  MFT-3A expression levels in a dormant cultivar used for the detection of the QTL were higher after physiological maturity; this increased expression correlated with a single nucleotide polymorphism in the promoter region.,  Furthermore,  precocious germination of isolated immature embryos was suppressed by transient introduction of MFT driven by the maize (Zea mays) ubiquitin promoter.,  Taken together,  these results suggest that MFT plays an important role in the regulation of germination in wheat.  ,  In situ hybridization analysis indicated that MFT was exclusively expressed in the scutellum and coleorhiza.,  Mapping analysis showed that MFT on chromosome 3A (MFT-3A) colocalized with the seed dormancy quantitative trait locus (QTL) QPhs.ocs-3A.1.,  We found that a wheat homolog of MOTHER OF FT AND TFL1 (MFT) was upregulated after physiological maturity in dormant seeds grown at the lower temperature.]\"} ], \"id\": \"e88\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"43\", \"fromConcept\": \"4\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.558441162109375\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Phylogenetic analysis classified the PEBP genes into four subfamilies (PEBP-like,  MFT-like,  TFL-like and FT-like); the PEBP-like subfamily was identified as a new subfamily with genes in this subfamily were conserved in plants.]\"} ], \"id\": \"e89\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"42\", \"fromConcept\": \"4\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"34.82606887817383\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[These findings suggest that TaMFT-A1 may invoke different mechanisms for controlling seed dormancy\\/germination among winter wheat cultivars.  ,  Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  However,  allelic variation in TaMFT-A1 between the two winter wheat cultivars differed from that was observed in spring wheat cultivars.,  TaMFT-A1 transcript levels were up-regulated by high temperature but down-regulated by low temperature or seed storage time.,  TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.,  The Jagger TaMFT-A1 allele is a novel haplotype and appears extensively in winter wheat cultivars.,  There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars.]\"} ], \"id\": \"e90\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"41\", \"fromConcept\": \"4\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"42.871280670166016\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Previous research has shown TaMFT-3A as having a large impact on PHS resistance.,  Markers for both TaMFT-3A and TaMFT-3B2 should be used in selecting for increased wheat dormancy and PHS resistance.  ,  In this study,  the TaMFT (3A,  3B1,  3B2,  3D),  TaMKK3-4A,  and TaVP1-3B genes were assessed for association with PHS in a double-haploid line (DHL) hard red winter wheat population derived from a BC1 cross between the cultivars Loma and Warhorse,  where Loma was the recurrent and PHS susceptible parent.,  The PHS variation was associated with the TaMFT-A and the B2 homeolog with Loma carrying mutant forms of each gene.,  In the current study,  the TaMFT-3A and TaMFT-3B2 alleles each explained 14% of observed PHS variation.,  No sequence variation between Loma and Warhorse was detected in the exons of the TaMFT-B1 and D homeologs.,  TAMFT-3A and TAMFT-3B2 homeologs are associated with wheat preharvest sprouting.]\"} ], \"id\": \"e91\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"39\", \"fromConcept\": \"34\", \"attributes\": [{ \"attrname\": \"TFIDF_1\", \"value\": \"4.899999618530273\"} , { \"attrname\": \"TFIDF\", \"value\": \"4.382789611816406\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Temperature during seed development strongly affects seed dormancy in wheat (Triticum aestivum) with lower temperatures producing higher levels of seed dormancy.]\"} ], \"id\": \"e92\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"39\", \"fromConcept\": \"33\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { 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\"EVIDENCE\", \"value\": \"[Mapping pre-harvest sprouting resistance loci in AAC Innova  AAC Tenacious spring wheat population.,  Pre-harvest sprouting (PHS) is a major problem for wheat production due to its direct detrimental effects on wheat yield,  end-use quality and seed viability.]\"} ], \"id\": \"e94\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"40\", \"fromConcept\": \"67\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"5.460597991943359\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Pre-harvest sprouting (PHS) is a major problem for wheat production due to its direct detrimental effects on wheat yield,  end-use quality and seed viability.]\"} ], \"id\": \"e95\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"41\", \"fromConcept\": \"33\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"9.86453628540039\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Multiple genes involved in the development of seed dormancy are associated with PHS.,  Investigating the genetics that control PHS resistance may result in increased control of seed dormancy.]\"} ], \"id\": \"e96\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"42\", \"fromConcept\": \"36\", \"attributes\": [{ \"attrname\": \"TFIDF_1\", \"value\": \"25.465595245361328\"} , { \"attrname\": \"TFIDF\", \"value\": \"24.19158172607422\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[A high seed germination rate in this higher soil temperature environment is required for this specific management system.,  TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.]\"} ], \"id\": \"e97\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"42\", \"fromConcept\": \"35\", \"attributes\": [{ \"attrname\": \"TFIDF_1\", \"value\": \"15.673922538757324\"} , { \"attrname\": \"TFIDF\", \"value\": \"15.073198318481445\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars.]\"} ], \"id\": \"e98\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"42\", \"fromConcept\": \"68\", \"attributes\": [{ \"attrname\": 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\"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"42\", \"fromConcept\": \"69\", \"attributes\": [{ \"attrname\": \"TFIDF_1\", \"value\": \"4.524808883666992\"} , { \"attrname\": \"TFIDF\", \"value\": \"5.2377166748046875\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[A high seed germination rate in this higher soil temperature environment is required for this specific management system.]\"} ], \"id\": \"e101\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"43\", \"fromConcept\": \"34\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"3.9665329456329346\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The phosphatidylethanolamine binding protein (PEBP) family comprises ancient proteins found throughout the biosphere that play an important role in plant growth and development,  flowering,  seed development and dormancy.]\"} ], \"id\": \"e102\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"43\", \"fromConcept\": \"36\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"7.27937126159668\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Quantitative real-time PCR (qRT-PCR) analysis revealed that seven randomly selected PEBP genes expressed differently during seed germination under cold,  drought,  flood,  heat and salt stress treatments,  and five of these genes (TaPEBP1,  TaPEBP5,  TaPEBP9,  TaPEBP66 and TaPEBP69) showed significantly higher expression under different stress treatments,  indicating that these genes play important roles during seed germination under stress conditions.  ]\"} ], \"id\": \"e103\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"44\", \"fromConcept\": \"35\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"43.21472930908203\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Pre-harvest sprouting (PHS) is one of the serious problems for wheat production,  especially in rainy regions.,  Detection of QTLs for traits associated with pre-harvest sprouting resistance in bread wheat (Triticum aestivum L.).]\"} ], \"id\": \"e104\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"44\", \"fromConcept\": \"37\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"7.742416858673096\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Although seed dormancy is the most critical trait for PHS resistance,  the control of heading time should also be considered to prevent seed maturation during unfavorable conditions.]\"} ], \"id\": \"e105\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"44\", \"fromConcept\": \"33\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"13.140732765197754\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In this study,  we conducted QTL analysis for three PHS resistant related traits,  seed dormancy,  heading time and awn length,  by using recombinant inbred lines from 'Zenkouji-komugi' (high PHS resistance)  'Chinese Spring' (weak PHS resistance).,  Although seed dormancy is the most critical trait for PHS resistance,  the control of heading time should also be considered to prevent seed maturation during unfavorable conditions.,  QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.]\"} ], \"id\": \"e106\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"44\", \"fromConcept\": \"65\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"7.742416858673096\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Although seed dormancy is the most critical trait for PHS resistance,  the control of heading time should also be considered to prevent seed maturation during unfavorable conditions.]\"} ], \"id\": \"e107\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"44\", \"fromConcept\": \"70\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"9.180418014526367\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In this study,  we conducted QTL analysis for three PHS resistant related traits,  seed dormancy,  heading time and awn length,  by using recombinant inbred lines from 'Zenkouji-komugi' (high PHS resistance)  'Chinese Spring' (weak PHS resistance).]\"} ], \"id\": \"e108\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"46\", \"fromConcept\": \"38\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"8.116174697875977\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Response of embryo-half seeds to exogenous abscisic acid (ABA) indicates that ABA sensitivity is correlated with whole-seed germinability,  which can be explained in part by genotypes of MOTHER OF FT AND TFL (MFT) allele modulating ABA signaling of wheat seeds.]\"} ], \"id\": \"e109\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"46\", \"fromConcept\": \"37\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"7.742416858673096\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Contents of the respective hormones in seeds showed a characteristic pattern during seed maturation from 30-day post anthesis to 60-day post anthesis.]\"} ], \"id\": \"e110\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"46\", \"fromConcept\": \"65\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"7.742416858673096\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Contents of the respective hormones in seeds showed a characteristic pattern during seed maturation from 30-day post anthesis to 60-day post anthesis.]\"} ], \"id\": \"e111\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"46\", \"fromConcept\": \"33\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"11.468425750732422\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[This study examined contents of nine plant hormones in developing seeds of field-grown wheat varieties (Triticum aestivum L.) with different seed dormancy using liquid chromatography-mass spectrometry.,  These results demonstrate that variation in wheat seed dormancy is attributable to ABA sensitivity of mature seeds,  but not to ABA contents in developing seeds.  ]\"} ], \"id\": \"e112\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"47\", \"fromConcept\": \"72\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"19.045907974243164\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Helitrons,  DNA transposons that replicate via a rolling-circle replication mechanism,  are a major driving force behind genome evolution.]\"} ], \"id\": \"e113\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"47\", \"fromConcept\": \"33\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.299724578857422\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We found that CACTAs have inserted into many agronomically important genes,  such as seed dormancy gene TaMFT and vernalization gene TaVrn1,  indicating the important role of CACTAs in modern wheat adaptation.  ]\"} ], \"id\": \"e114\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"48\", \"fromConcept\": \"33\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"9.86453628540039\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.,  By the combined use of QTL mapping and WGCNA,  29,  47,  20,  26,  54,  46 and 22 candidate genes were predicted for PH,  SL,  kernel length (KL),  kernel width,  thousand kernel weight,  seed dormancy,  and seed vigor,  respectively.]\"} ], \"id\": \"e115\", 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signals.  ,  Nuclear translocation of OsMFT1 that is impeded by OsFTIP1 promotes drought tolerance in rice.,  Further studies discovered that OsMFT1 interacts with two key drought-related transcription factors,  OsbZIP66 and OsMYB26,  regulating their binding capacity on drought-related genes and thereby enhancing drought tolerance in rice.]\"} ], \"id\": \"e173\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"65\", \"fromConcept\": \"74\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"93.55600679749978\"} , { \"attrname\": \"PMID\", \"value\": \"30671680\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"93.55600679749978\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Our results showed that MKKK62 negatively controls seed dormancy in rice,  and that during the germination stage and the late stage of seed maturation,  ABA sensitivity and OsMFT transcription are negatively controlled by MKKK62.]\"} ], \"id\": \"e174\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"33\", \"fromConcept\": \"74\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"3\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"590.9586203792423\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"30671680\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"590.9586203792423\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The OE lines showed decreased transcript levels of OsMFT,  a homolog of a gene that controls seed dormancy in wheat.,  The up-regulation of OsMFT in MKK3-knockout lines (OE\\/mkk3) and MAPK7\\/14-knockout lines (OE\\/mapk7\\/mapk14) indicated that the MKKK62-MKK3-MAPK7\\/MAPK14 system controlled seed dormancy by regulating the transcription of OsMFT.,  Our results showed that MKKK62 negatively controls seed dormancy in rice,  and that during the germination stage and the late stage of seed maturation,  ABA sensitivity and OsMFT transcription are negatively controlled by MKKK62.]\"} ], \"id\": \"e175\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"96\", \"fromConcept\": \"74\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"15.589465141296387\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The OE lines showed decreased transcript levels of OsMFT,  a homolog of a gene that controls seed dormancy in wheat.,  The up-regulation of OsMFT in MKK3-knockout lines (OE\\/mkk3) and MAPK7\\/14-knockout lines (OE\\/mapk7\\/mapk14) indicated that the MKKK62-MKK3-MAPK7\\/MAPK14 system controlled seed dormancy by regulating the transcription of OsMFT.,  Our results showed that MKKK62 negatively controls seed dormancy in rice,  and that during the germination stage and the late stage of seed maturation,  ABA sensitivity and OsMFT transcription are negatively controlled by MKKK62.]\"} ], \"id\": \"e176\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"79\", \"fromConcept\": \"75\", \"attributes\": [{ \"attrname\": \"EVIDENCE\", \"value\": \"[TAIR: AnalysisReference: 501780126]\"} ], \"id\": \"e177\", \"contexts\": { } , \"evidences\": [\"Inferred from Sequence Model\"], \"ofType\": \"located_in\"} , { \"toConcept\": \"78\", \"fromConcept\": \"75\", \"attributes\": [{ \"attrname\": \"EVIDENCE\", \"value\": \"[TAIR: Publication: 501738177,  PMID: 20551347]\"} ], \"id\": \"e178\", \"contexts\": { } , \"evidences\": [\"Inferred from Direct Assay\"], \"ofType\": \"located_in\"} , { \"toConcept\": \"97\", \"fromConcept\": \"75\", \"attributes\": [{ 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\"75\", \"attributes\": [], \"id\": \"e213\", \"contexts\": { } , \"evidences\": [\"ARAGWAS\", \"Imported from database\"], \"ofType\": \"has_variation\"} , { \"toConcept\": \"107\", \"fromConcept\": \"35\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"8\"} , { \"attrname\": \"CoSenNum\", \"value\": \"9\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"2777.8086535796288\"} , { \"attrname\": \"PMID\", \"value\": \"32170894,  30671680\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"979.8605572239758\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[OsMFT2 is involved in the regulation of ABA signaling-mediated seed germination through interacting with OsbZIP23\\/66\\/72 in rice.,  The OE lines showed decreased transcript levels of OsMFT,  a homolog of a gene that controls seed dormancy in wheat.,  The up-regulation of OsMFT in MKK3-knockout lines (OE\\/mkk3) and MAPK7\\/14-knockout lines (OE\\/mapk7\\/mapk14) indicated that the MKKK62-MKK3-MAPK7\\/MAPK14 system controlled seed dormancy by regulating the transcription of OsMFT.,  OsMFT2 knock-out lines exhibited pre-harvest sprouting,  whereas OsMFT2 overexpression lines showed delayed germination.,  Our results showed that MKKK62 negatively controls seed dormancy in rice,  and that during the germination stage and the late stage of seed maturation,  ABA sensitivity and OsMFT transcription are negatively controlled by MKKK62.,  The performance of the transgenic plants demonstrated that overexpressing OsbZIP23 rescued the pre-harvest sprouting phenotype and the decrease in ABA-signaling genes expression caused by OsMFT2 knock-out.,  Exogenous abscisic acid (ABA) treatment of imbibed seeds and seedlings indicated that OsMFT2 altered ABA sensitivity during seed germination and post-germination growth.,  Here,  we identified a gene,  OsMFT2,  that negatively regulates seed germination in rice.,  All of these results demonstrate that OsMFT2 positively regulates ABA-responsive genes through interacting with OsbZIP23\\/66\\/72 and functions in seed germination.  ]\"} ], \"id\": \"e214\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"37\", \"fromConcept\": \"107\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"93.55600679749978\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"30671680\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"93.55600679749978\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Our results showed that MKKK62 negatively controls seed dormancy in rice,  and that during the germination stage and the late stage of seed maturation,  ABA sensitivity and OsMFT transcription are negatively controlled by MKKK62.]\"} ], \"id\": \"e215\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"96\", \"fromConcept\": \"107\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"15.589465141296387\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The OE lines showed decreased transcript levels of OsMFT,  a homolog of a gene that controls seed dormancy in wheat.,  The up-regulation of OsMFT in MKK3-knockout lines (OE\\/mkk3) and MAPK7\\/14-knockout lines (OE\\/mapk7\\/mapk14) indicated that the MKKK62-MKK3-MAPK7\\/MAPK14 system controlled seed dormancy by regulating the transcription of OsMFT.,  Our results showed that MKKK62 negatively controls seed dormancy in rice,  and that during the germination stage and the late stage of seed maturation,  ABA sensitivity and OsMFT transcription are negatively controlled by MKKK62.]\"} ], \"id\": \"e216\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"113\", \"fromConcept\": \"108\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"5\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"768.2367394916885\"} , { \"attrname\": \"PMID\", \"value\": \"23789941,  33845208\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"330.3930927198671\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Phosphorylation of OsFD1 by OsCIPK3 promotes the formation of RFT1-containing florigen activation complex for long-day flowering in rice.]\"} ], \"id\": \"e217\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"114\", \"fromConcept\": \"108\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"3\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"146.92132619946233\"} , { \"attrname\": \"PMID\", \"value\": \"34879072\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"51.79025683427062\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Subcellular localization analysis confirmed the signal peptide is indispensable for spPLD secretion into the extracellular spaces,  where spPLD hydrolyzes substrates. spPLD overexpression results in delayed heading time which is dependent on its secretory character,  while suppression or deficiency of spPLD led to the early heading of rice under both short-day and long-day conditions,  which is consistent with that spPLD overexpression\\/suppression indeed led to the reduced\\/increased Hd3a\\/RFT1 (Arabidopsis Flowing Locus T homolog) activities.]\"} ], \"id\": \"e218\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"115\", \"fromConcept\": \"108\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"6\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"181.02330846363247\"} , { \"attrname\": \"PMID\", \"value\": \"35723564,  33525623\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"38.60528838082064\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Reverse transcription quantitative PCR analysis showed that the loss of OsCCA1a function induces the expression of the floral repressors PSEUDO-RESPONSE REGULATOR 37 (OsPRR37) and Days to Heading 8 (DTH8),  followed by repression of the Early heading date 1 (Ehd1)-Heading date 3a (Hd3a)-RICE FLOWERING LOCUS T 1 (RFT1) pathway.,  Reverse transcription-quantitative PCR analysis revealed that among the flowering time-related genes,  the expression of the major floral repressor Grain number and heading date 7 (Ghd7) was mainly upregulated in rfs mutants,  resulting in downregulation of its downstream floral inducers,  including Early heading date 1 (Ehd1),  Heading date 3a (Hd3a),  and Rice FLOWERING LOCUS T 1 (RFT1).]\"} ], \"id\": \"e219\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"116\", \"fromConcept\": \"108\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"18\"} , { \"attrname\": \"CoSenNum\", \"value\": \"3\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"869.5412953116526\"} , { \"attrname\": \"PMID\", \"value\": \"24759811,  35395113,  28517045,  31278262,  22892321,  26639303\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"143.49997327002893\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Se14,  encoding a JmjC domain-containing protein,  plays key roles in long-day suppression of rice flowering through the demethylation of H3K4me3 of RFT1.,  ChIP assays of the methylation states of histone H3 at lysine 4 (H3K4) revealed that the trimethylated H3K4 in the promoter region of the RFT1 chromatin was significantly increased in HS112.,  We conclude that Se14 is a novel photoperiod-sensitivity gene that has a suppressive effect on floral transition (flowering time) under long day-length conditions through the modification of chromatin structure by H3K4me3 demethylation in the promoter region of RFT1.  ]\"} ], \"id\": \"e220\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"117\", \"fromConcept\": \"108\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"366.8579008129018\"} , { \"attrname\": \"PMID\", \"value\": \"24759811\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"366.8579008129018\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Se14,  encoding a JmjC domain-containing protein,  plays key roles in long-day suppression of rice flowering through the demethylation of H3K4me3 of RFT1.,  We conclude that Se14 is a novel photoperiod-sensitivity gene that has a suppressive effect on floral transition (flowering time) under long day-length conditions through the modification of chromatin structure by H3K4me3 demethylation in the promoter region of RFT1.  ]\"} ], \"id\": \"e221\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"90\", \"fromConcept\": \"108\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"5\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"568.6043026336561\"} , { \"attrname\": \"PMID\", \"value\": \"31085810,  32737885\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"253.29240036685042\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[To further our study of RFT1,  we overexpressed the gene and examined the expression patterns of major regulatory genes during floral transition and inflorescence development.,  This indicated that RFT1 promotes the expression of major regulatory genes that are important for inflorescence development.]\"} ], \"id\": \"e222\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"118\", \"fromConcept\": \"108\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"19\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"1243.6853854390993\"} , { \"attrname\": \"PMID\", \"value\": \"24498868,  35575899,  28043949,  21830130,  35723564,  25378698,  25732533\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"180.82023670534545\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Reverse transcription quantitative PCR analysis showed that the loss of OsCCA1a function induces the expression of the floral repressors PSEUDO-RESPONSE REGULATOR 37 (OsPRR37) and Days to Heading 8 (DTH8),  followed by repression of the Early heading date 1 (Ehd1)-Heading date 3a (Hd3a)-RICE FLOWERING LOCUS T 1 (RFT1) pathway.,  Both Hd3a and RFT1 are regulated by Early heading date 1 (Ehd1) and Days to heading on chromosome 2 (DTH2) while Heading date 1 (Hd1) also governs Hd3a expression.]\"} ], \"id\": \"e223\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"119\", \"fromConcept\": \"108\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"10\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"259.2996296371541\"} , { \"attrname\": \"PMID\", \"value\": \"30790011,  29879910,  27677631,  28687802\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"51.863956308073284\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The RFT1 [ZS97] allele was shown to delay heading and increase plant height,  grain weight,  grain number and grain yield,  indicating that RFT1 plays an important role in the growth and development of rice.]\"} ], \"id\": \"e224\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"73\", \"fromConcept\": \"108\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"19\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"717.4080381442222\"} , { \"attrname\": \"PMID\", \"value\": \"30790011,  35248762,  26795142,  33525623,  28290557,  21148627,  28554475,  28687802\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"98.02126634585875\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The RFT1 [ZS97] allele was shown to delay heading and increase plant height,  grain weight,  grain number and grain yield,  indicating that RFT1 plays an important role in the growth and development of rice.]\"} ], \"id\": \"e225\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"120\", \"fromConcept\": \"108\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"7\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"192.1432827631121\"} , { \"attrname\": \"PMID\", \"value\": \"26795142,  33525623,  28687802\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"46.9799225557872\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Reverse transcription-quantitative PCR analysis revealed that among the flowering time-related genes,  the expression of the major floral repressor Grain number and heading date 7 (Ghd7) was mainly upregulated in rfs mutants,  resulting in downregulation of its downstream floral inducers,  including Early heading date 1 (Ehd1),  Heading date 3a (Hd3a),  and Rice FLOWERING LOCUS T 1 (RFT1).,  The RFT1 [ZS97] allele was shown to delay heading and increase plant height,  grain weight,  grain number and grain yield,  indicating that RFT1 plays an important role in the growth and development of rice.]\"} ], \"id\": \"e226\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"121\", \"fromConcept\": \"108\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"667.5791801292717\"} , { \"attrname\": \"PMID\", \"value\": \"32076435\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"566.2940979494742\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Here,  we reported that rice florigen gene RFT1 plays an important role in controlling amino acid contents of rice grain.,  Pleiotropic Effects of Rice Florigen Gene RFT1 on the Amino Acid Content of Unmilled Rice.]\"} ], \"id\": \"e227\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"122\", \"fromConcept\": \"110\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"6\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"351.98222612219206\"} , { \"attrname\": \"PMID\", \"value\": \"25036785,  18372294,  18586868\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"167.30017831849545\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We conclude that Dlf1 acts as a transactivator to downregulate Ehd2\\/RID1\\/OsId1 in the signal transduction pathway of flowering and plays an important role in the regulation of plant height in rice.  ]\"} ], \"id\": \"e228\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"123\", \"fromConcept\": \"110\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"3\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"43.44660955832296\"} , { \"attrname\": \"PMID\", \"value\": \"35166949\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"14.482203186107654\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Positive selection,  detected more at 5' regions than at coding regions of some of the genes,  involved 22 loci (e.g.,  An-1,  SH4,  Rc,  Hd3a,  GL3.2,  OsMYB3,  OsDFR,  and OsMYB15),  which affected traits from easy harvesting,  grain color,  flowering time,  productivity,  to likely taste and tolerance.]\"} ], \"id\": \"e229\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"124\", \"fromConcept\": \"110\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"36.17568999321293\"} , { \"attrname\": \"PMID\", \"value\": \"33256095\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"36.17568999321293\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Analysis of 24 candidate genes associated with Hd,  T,  and TGW traits showed seven non-synonymous variations in the sequence of Hd3a and Ehd2 from the Hd genes (not in a KEGG pathway),  D10 and D53 from the T genes (strigolactones biosynthetic pathway),  and Gn1a and GIF1 from the TGW genes (cytokinin biosynthetic and starch and sucrose metabolism pathways).]\"} ], \"id\": \"e230\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"125\", \"fromConcept\": \"110\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"6\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"413.47349953748153\"} , { \"attrname\": \"PMID\", \"value\": \"23416454,  25326616,  28549969\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"92.64840910228668\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Taken together,  our findings indicate that,  in response to day length,  DTH8 plays a critical role in mediating the transcriptional regulation of Hd3a by Hd1 through the DTH8-Hd1 module to shape epigenetic modifications in photoperiodic flowering.  ]\"} ], \"id\": \"e231\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"126\", \"fromConcept\": \"110\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"5\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"470.20594907405666\"} , { \"attrname\": \"PMID\", \"value\": \"19675157\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"122.64707782961068\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Here,  we show that the s73 mutant,  identified in a gamma-irradiated Bahia collection,  displays early flowering and photoperiodic insensitivity due to a null mutation in the PHOTOPERIOD SENSITIVITY5 (SE5) gene,  which encodes an enzyme implicated in phytochrome chromophore biosynthesis. s73 mutant plants show a number of alterations in the characteristic diurnal expression patterns of master genes involved in photoperiodic control of flowering,  resulting in up-regulation of the floral integrator Heading date3a (Hd3a).]\"} ], \"id\": \"e232\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"120\", \"fromConcept\": \"110\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"7\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"408.557660760497\"} , { \"attrname\": \"PMID\", \"value\": \"27620492,  20543848,  28346447\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"127.13993170232379\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In addition,  OsCOL9 served as a potential yield gene,  and its deficiency reduced the grain number of main panicle in plants.,  Ghd7 (Grain number,  plant height and heading date 7) was acutely induced when phytochrome signals coincided with a photosensitive phase set differently by distinct photoperiods and this induction repressed Ehd1 the next morning.]\"} ], \"id\": \"e233\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"127\", \"fromConcept\": \"110\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"68.56740812258886\"} , { \"attrname\": \"PMID\", \"value\": \"33386250\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"34.61245351276739\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We also found many differentiated regions between subgroups within a subpopulation contained agronomically important loci,  such as DTH7,  Hd1 for heading date,  and qCT7 for cold tolerance,  providing new candidates for studying local adaptation or heterosis.]\"} ], \"id\": \"e234\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"110\", \"fromConcept\": \"128\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"154.77530545031982\"} , { \"attrname\": \"PMID\", \"value\": \"28794433,  33386250\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"115.65775363649209\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Notably,  we found most introgressions,  including the known heterotic loci Hd3a and TAC1,  were distributed differentially between the female and male parents of three-line indica hybrid rice,  indicating their potential contribution to heterosis.]\"} ], \"id\": \"e235\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"129\", \"fromConcept\": \"110\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"764.4926500472793\"} , { \"attrname\": \"PMID\", \"value\": \"22570445\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"654.5154452598599\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Inflorescence meristem identity in rice is specified by overlapping functions of three AP1\\/FUL-like MADS box genes and PAP2,  a SEPALLATA MADS box gene.]\"} ], \"id\": \"e236\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"130\", \"fromConcept\": \"112\", \"attributes\": [], \"id\": \"e237\", \"contexts\": { } , \"evidences\": [\"ARAGWAS\", \"Imported from database\"], \"ofType\": \"part_of\"} , { \"toConcept\": \"131\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} ], \"id\": \"e238\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"encodes\"} , { \"toConcept\": \"133\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"percent_target_id_query\", \"value\": \"97.0414\"} , { \"attrname\": \"percent_query_id_target\", \"value\": \"84.5361\"} , { \"attrname\": \"Homology_type\", \"value\": \"homoeolog_one2many\"} ], \"id\": \"e239\", \"contexts\": { } , \"evidences\": [\"ENSEMBL\", \"Imported from database\"], \"ofType\": \"homoeolog\"} , { \"toConcept\": \"134\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"percent_target_id_query\", \"value\": \"94.0828\"} , { \"attrname\": \"percent_query_id_target\", \"value\": \"90.8571\"} , { \"attrname\": \"Homology_type\", \"value\": \"homoeolog_one2many\"} ], \"id\": \"e240\", \"contexts\": { } , \"evidences\": [\"ENSEMBL\", \"Imported from database\"], \"ofType\": \"homoeolog\"} , { \"toConcept\": \"132\", \"fromConcept\": \"135\", \"attributes\": [{ \"attrname\": \"WEIGHT\", \"value\": \"0.00855733946842171\"} ], \"id\": \"e241\", \"contexts\": { } , \"evidences\": [\"Imported from database\", \"GENIE3\"], \"ofType\": \"regulates\"} , { \"toConcept\": \"132\", \"fromConcept\": \"136\", \"attributes\": [{ \"attrname\": \"WEIGHT\", \"value\": \"0.0104231108792557\"} ], \"id\": \"e242\", \"contexts\": { } , \"evidences\": [\"Imported from database\", \"GENIE3\"], \"ofType\": \"regulates\"} , { \"toConcept\": \"132\", \"fromConcept\": \"137\", \"attributes\": [{ \"attrname\": \"WEIGHT\", \"value\": \"0.0116669195030997\"} ], \"id\": \"e243\", \"contexts\": { } , \"evidences\": [\"Imported from database\", \"GENIE3\"], \"ofType\": \"regulates\"} , { \"toConcept\": \"132\", \"fromConcept\": \"138\", \"attributes\": [{ \"attrname\": \"WEIGHT\", \"value\": \"0.0086095654814862\"} ], \"id\": \"e244\", \"contexts\": { } , \"evidences\": [\"Imported from database\", \"GENIE3\"], \"ofType\": \"regulates\"} , { \"toConcept\": \"132\", \"fromConcept\": \"139\", \"attributes\": [{ \"attrname\": \"WEIGHT\", \"value\": \"0.00936090005243539\"} ], \"id\": \"e245\", \"contexts\": { } , \"evidences\": [\"Imported from database\", \"GENIE3\"], \"ofType\": \"regulates\"} , { \"toConcept\": \"132\", \"fromConcept\": \"140\", \"attributes\": [{ \"attrname\": \"WEIGHT\", \"value\": \"0.00903296762023426\"} ], \"id\": \"e246\", \"contexts\": { } , \"evidences\": [\"Imported from database\", \"GENIE3\"], \"ofType\": \"regulates\"} , { \"toConcept\": \"132\", \"fromConcept\": \"141\", \"attributes\": [{ \"attrname\": \"WEIGHT\", \"value\": \"0.010447303402784\"} ], \"id\": \"e247\", \"contexts\": { } , \"evidences\": [\"Imported from database\", \"GENIE3\"], \"ofType\": \"regulates\"} , { \"toConcept\": \"132\", \"fromConcept\": \"142\", \"attributes\": [{ \"attrname\": \"WEIGHT\", \"value\": \"0.00859721404846663\"} ], \"id\": \"e248\", \"contexts\": { } , \"evidences\": [\"Imported from database\", \"GENIE3\"], \"ofType\": \"regulates\"} , { \"toConcept\": \"132\", \"fromConcept\": \"143\", \"attributes\": [{ \"attrname\": \"WEIGHT\", \"value\": \"0.00961667245880646\"} ], \"id\": \"e249\", \"contexts\": { } , \"evidences\": [\"Imported from database\", \"GENIE3\"], \"ofType\": \"regulates\"} , { \"toConcept\": \"132\", \"fromConcept\": \"144\", \"attributes\": [{ \"attrname\": \"WEIGHT\", \"value\": \"0.0103292948670821\"} ], \"id\": \"e250\", \"contexts\": { } , \"evidences\": [\"Imported from database\", \"GENIE3\"], \"ofType\": \"regulates\"} , { \"toConcept\": \"132\", \"fromConcept\": \"7\", \"attributes\": [{ \"attrname\": \"WEIGHT\", \"value\": \"0.0122546075159461\"} ], \"id\": \"e251\", \"contexts\": { } , \"evidences\": [\"Imported from database\", \"GENIE3\"], \"ofType\": \"regulates\"} , { \"toConcept\": \"33\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"12\"} , { \"attrname\": \"CoSenNum\", \"value\": \"5\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"2182.5321108631397\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"35698038,  35971881,  35124171,  31988624,  21896881,  24069187\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"422.90530377243704\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We found that CACTAs have inserted into many agronomically important genes,  such as seed dormancy gene TaMFT and vernalization gene TaVrn1,  indicating the important role of CACTAs in modern wheat adaptation.  ,  These findings suggest that TaMFT-A1 may invoke different mechanisms for controlling seed dormancy\\/germination among winter wheat cultivars.  ,  Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.,  Mapping analysis showed that MFT on chromosome 3A (MFT-3A) colocalized with the seed dormancy quantitative trait locus (QTL) QPhs.ocs-3A.1.]\"} ], \"id\": \"e252\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"67\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"3\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"308.9575822951592\"} , { \"attrname\": \"PMID\", \"value\": \"34911435\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"214.9703430806112\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Pre-harvest sprouting (PHS) is a major problem for wheat production due to its direct detrimental effects on wheat yield,  end-use quality and seed viability.]\"} ], \"id\": \"e253\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"36\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"4\"} , { \"attrname\": \"CoSenNum\", \"value\": \"5\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"1315.436492389832\"} , { \"attrname\": \"PMID\", \"value\": \"24932489,  33362967,  24069187\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"842.497691464232\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[All these evidences suggest that GmMFT may be a negative regulator of seed germination.  ,  Recent studies in both Arabidopsis and wheat have uncovered a new role of MOTHER OF FT AND TFL1 (MFT) in seed germination.,  Detailed expression analysis showed that the mRNA level of GmMFT increased with seed development but declined during seed germination.,  Ectopic expression of GmMFT CDS in Arabidopsis moderately inhibited seed germination.,  TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.]\"} ], \"id\": \"e254\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"38\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"131.51248619480248\"} , { \"attrname\": \"PMID\", \"value\": \"31988624\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"65.75624309740124\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Response of embryo-half seeds to exogenous abscisic acid (ABA) indicates that ABA sensitivity is correlated with whole-seed germinability,  which can be explained in part by genotypes of MOTHER OF FT AND TFL (MFT) allele modulating ABA signaling of wheat seeds.]\"} ], \"id\": \"e255\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"34\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"5\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"274.7481218417024\"} , { \"attrname\": \"PMID\", \"value\": \"24932489,  33362967,  21896881\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"76.86510374574391\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Detailed expression analysis showed that the mRNA level of GmMFT increased with seed development but declined during seed germination.]\"} ], \"id\": \"e256\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"35\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"5\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"1774.4318952708709\"} , { \"attrname\": \"PMID\", \"value\": \"27162497,  34911435,  35790923,  24069187\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"524.9402428538087\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars.]\"} ], \"id\": \"e257\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"43\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.558441162109375\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Phylogenetic analysis classified the PEBP genes into four subfamilies (PEBP-like,  MFT-like,  TFL-like and FT-like); the PEBP-like subfamily was identified as a new subfamily with genes in this subfamily were conserved in plants.]\"} ], \"id\": \"e258\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"46\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.101876258850098\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Response of embryo-half seeds to exogenous abscisic acid (ABA) indicates that ABA sensitivity is correlated with whole-seed germinability,  which can be explained in part by genotypes of MOTHER OF FT AND TFL (MFT) allele modulating ABA signaling of wheat seeds.]\"} ], \"id\": \"e259\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"44\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.334551811218262\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.]\"} ], \"id\": \"e260\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"40\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.605947494506836\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Comparative analyses of the genetic intervals of identified QTLs with that of already identified and cloned PHS resistance gene intervals using IWGSC RefSeq v2.0 identified MFT-A1b (in QTL interval QPhs.lrdc-3A.1) and AGO802A (in QTL interval QPhs.lrdc-3A.2) on chromosome 3A,  MFT-3B-1 (in QTL interval QPhs.lrdc-3B.1) on chromosome 3B,  and AGO802D,  HUB1,  TaVp1-D1 (in QTL interval QPhs.lrdc-3D.1) and TaMyb10-D1 (in QTL interval QPhs.lrdc-3D.2) on chromosome 3D.]\"} ], \"id\": \"e261\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"39\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"15.68675708770752\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In a complementation analysis,  high levels of MFT expression were correlated with a low germination index in T1 seeds.,  MFT-3A expression levels in a dormant cultivar used for the detection of the QTL were higher after physiological maturity; this increased expression correlated with a single nucleotide polymorphism in the promoter region.,  Furthermore,  precocious germination of isolated immature embryos was suppressed by transient introduction of MFT driven by the maize (Zea mays) ubiquitin promoter.,  Taken together,  these results suggest that MFT plays an important role in the regulation of germination in wheat.  ,  In situ hybridization analysis indicated that MFT was exclusively expressed in the scutellum and coleorhiza.,  Mapping analysis showed that MFT on chromosome 3A (MFT-3A) colocalized with the seed dormancy quantitative trait locus (QTL) QPhs.ocs-3A.1.,  We found that a wheat homolog of MOTHER OF FT AND TFL1 (MFT) was upregulated after physiological maturity in dormant seeds grown at the lower temperature.]\"} ], \"id\": \"e262\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"45\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"12.827485084533691\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We used a DNA marker to detect the 'Zenkoujikomugi'-type (Zen-type) SNP and examined the genotype of MFT-3A in Japanese wheat varieties,  and we found that 169 of 324 varieties carry the Zen-type SNP.,  In the wheat (Triticum aestivum L.) cultivar 'Zenkoujikomugi',  a single nucleotide polymorphism (SNP) in the promoter of MOTHER OF FT AND TFL1 on chromosome 3A (MFT-3A) causes an increase in the level of gene expression,  resulting in strong grain dormancy.,  To examine the relationship between MFT-3A genotype and grain dormancy,  we performed a germination assay in three wheat-growing seasons.]\"} ], \"id\": \"e263\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"41\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"42.871280670166016\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Previous research has shown TaMFT-3A as having a large impact on PHS resistance.,  Markers for both TaMFT-3A and TaMFT-3B2 should be used in selecting for increased wheat dormancy and PHS resistance.  ,  In this study,  the TaMFT (3A,  3B1,  3B2,  3D),  TaMKK3-4A,  and TaVP1-3B genes were assessed for association with PHS in a double-haploid line (DHL) hard red winter wheat population derived from a BC1 cross between the cultivars Loma and Warhorse,  where Loma was the recurrent and PHS susceptible parent.,  The PHS variation was associated with the TaMFT-A and the B2 homeolog with Loma carrying mutant forms of each gene.,  In the current study,  the TaMFT-3A and TaMFT-3B2 alleles each explained 14% of observed PHS variation.,  No sequence variation between Loma and Warhorse was detected in the exons of the TaMFT-B1 and D homeologs.,  TAMFT-3A and TAMFT-3B2 homeologs are associated with wheat preharvest sprouting.]\"} ], \"id\": \"e264\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"48\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.746791839599609\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.]\"} ], \"id\": \"e265\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"42\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"34.82606887817383\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[These findings suggest that TaMFT-A1 may invoke different mechanisms for controlling seed dormancy\\/germination among winter wheat cultivars.  ,  Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  However,  allelic variation in TaMFT-A1 between the two winter wheat cultivars differed from that was observed in spring wheat cultivars.,  TaMFT-A1 transcript levels were up-regulated by high temperature but down-regulated by low temperature or seed storage time.,  TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.,  The Jagger TaMFT-A1 allele is a novel haplotype and appears extensively in winter wheat cultivars.,  There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars.]\"} ], \"id\": \"e266\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"47\", \"fromConcept\": \"132\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.334551811218262\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We found that CACTAs have inserted into many agronomically important genes,  such as seed dormancy gene TaMFT and vernalization gene TaVrn1,  indicating the important role of CACTAs in modern wheat adaptation.  ]\"} ], \"id\": \"e267\", 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candidate gene.,  QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.,  Mapping analysis showed that MFT on chromosome 3A (MFT-3A) colocalized with the seed dormancy quantitative trait locus (QTL) QPhs.ocs-3A.1.]\"} ], \"id\": \"e291\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"48\", \"fromConcept\": \"133\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.746791839599609\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.]\"} ], \"id\": \"e292\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"46\", \"fromConcept\": \"133\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.101876258850098\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Response of embryo-half seeds to exogenous abscisic acid (ABA) indicates that ABA sensitivity is correlated with whole-seed germinability,  which can be explained in part by genotypes of MOTHER OF FT AND TFL (MFT) allele modulating ABA signaling of wheat seeds.]\"} ], \"id\": \"e293\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"45\", \"fromConcept\": \"133\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"12.827485084533691\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We used a DNA marker to detect the 'Zenkoujikomugi'-type (Zen-type) SNP and examined the genotype of MFT-3A in Japanese wheat varieties,  and we found that 169 of 324 varieties carry the Zen-type SNP.,  In the wheat (Triticum aestivum L.) cultivar 'Zenkoujikomugi',  a single nucleotide polymorphism (SNP) in the promoter of MOTHER OF FT AND TFL1 on chromosome 3A (MFT-3A) causes an increase in the level of gene expression,  resulting in strong grain dormancy.,  To examine the relationship between MFT-3A genotype and grain dormancy,  we performed a germination assay in three wheat-growing seasons.]\"} ], \"id\": \"e294\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"39\", \"fromConcept\": \"133\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"15.68675708770752\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In a complementation analysis,  high levels of MFT expression were correlated with a low germination index in T1 seeds.,  MFT-3A expression levels in a dormant cultivar used for the detection of the QTL were higher after physiological maturity; this increased expression correlated with a single nucleotide polymorphism in the promoter region.,  Furthermore,  precocious germination of isolated immature embryos was suppressed by transient introduction of MFT driven by the maize (Zea mays) ubiquitin promoter.,  Taken together,  these results suggest that MFT plays an important role in the regulation of germination in wheat.  ,  In situ hybridization analysis indicated that MFT was exclusively expressed in the scutellum and coleorhiza.,  Mapping analysis showed that MFT on chromosome 3A (MFT-3A) colocalized with the seed dormancy quantitative trait locus (QTL) QPhs.ocs-3A.1.,  We found that a wheat homolog of MOTHER OF FT AND TFL1 (MFT) was upregulated after physiological maturity in dormant seeds grown at the lower temperature.]\"} ], \"id\": \"e295\", \"contexts\": { } , 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previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  However,  allelic variation in TaMFT-A1 between the two winter wheat cultivars differed from that was observed in spring wheat cultivars.,  TaMFT-A1 transcript levels were up-regulated by high temperature but down-regulated by low temperature or seed storage time.,  TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.,  The Jagger TaMFT-A1 allele is a novel haplotype and appears extensively in winter wheat cultivars.,  There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars.]\"} ], \"id\": \"e298\", \"contexts\": { } , 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shown TaMFT-3A as having a large impact on PHS resistance.,  Markers for both TaMFT-3A and TaMFT-3B2 should be used in selecting for increased wheat dormancy and PHS resistance.  ,  In this study,  the TaMFT (3A,  3B1,  3B2,  3D),  TaMKK3-4A,  and TaVP1-3B genes were assessed for association with PHS in a double-haploid line (DHL) hard red winter wheat population derived from a BC1 cross between the cultivars Loma and Warhorse,  where Loma was the recurrent and PHS susceptible parent.,  The PHS variation was associated with the TaMFT-A and the B2 homeolog with Loma carrying mutant forms of each gene.,  In the current study,  the TaMFT-3A and TaMFT-3B2 alleles each explained 14% of observed PHS variation.,  No sequence variation between Loma and Warhorse was detected in the exons of the TaMFT-B1 and D homeologs.,  TAMFT-3A and TAMFT-3B2 homeologs are associated with wheat preharvest sprouting.]\"} ], \"id\": \"e300\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], 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was mapped tightly associated with the peak of QTsg.osu-3A.,  The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.,  In this study,  the TaMFT (3A,  3B1,  3B2,  3D),  TaMKK3-4A,  and TaVP1-3B genes were assessed for association with PHS in a double-haploid line (DHL) hard red winter wheat population derived from a BC1 cross between the cultivars Loma and Warhorse,  where Loma was the recurrent and PHS susceptible parent.,  QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.,  Mapping analysis showed that MFT on chromosome 3A (MFT-3A) colocalized with the seed dormancy quantitative trait locus (QTL) QPhs.ocs-3A.1.]\"} ], \"id\": \"e307\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"48\", \"fromConcept\": \"134\", \"attributes\": [{ 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\"id\": \"e309\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"42\", \"fromConcept\": \"134\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"34.82606887817383\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[These findings suggest that TaMFT-A1 may invoke different mechanisms for controlling seed dormancy\\/germination among winter wheat cultivars.  ,  Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  However,  allelic variation in TaMFT-A1 between the two winter wheat cultivars differed from that was observed in spring wheat cultivars.,  TaMFT-A1 transcript levels were up-regulated by high temperature but down-regulated by low temperature or seed storage time.,  TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.,  The Jagger TaMFT-A1 allele is a novel haplotype and appears extensively in winter wheat cultivars.,  There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars.]\"} ], \"id\": \"e310\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"43\", \"fromConcept\": \"134\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.558441162109375\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Phylogenetic analysis classified the PEBP genes into four subfamilies (PEBP-like,  MFT-like,  TFL-like and FT-like); the PEBP-like subfamily was identified as a new subfamily with genes in this subfamily were conserved in plants.]\"} ], \"id\": \"e311\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"47\", \"fromConcept\": \"134\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.334551811218262\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We found that CACTAs have inserted into many agronomically important genes,  such as seed dormancy gene TaMFT and vernalization gene TaVrn1,  indicating the important role of CACTAs in modern wheat adaptation.  ]\"} ], \"id\": \"e312\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"45\", \"fromConcept\": \"134\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { 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\"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"42.871280670166016\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Previous research has shown TaMFT-3A as having a large impact on PHS resistance.,  Markers for both TaMFT-3A and TaMFT-3B2 should be used in selecting for increased wheat dormancy and PHS resistance.  ,  In this study,  the TaMFT (3A,  3B1,  3B2,  3D),  TaMKK3-4A,  and TaVP1-3B genes were assessed for association with PHS in a double-haploid line (DHL) hard red winter wheat population derived from a BC1 cross between the cultivars Loma and Warhorse,  where Loma was the recurrent and PHS susceptible parent.,  The PHS variation was associated with the TaMFT-A and the B2 homeolog with Loma carrying mutant forms of each gene.,  In the current study,  the TaMFT-3A and TaMFT-3B2 alleles each explained 14% of observed PHS variation.,  No sequence variation between Loma and Warhorse was detected in the exons of the TaMFT-B1 and D homeologs.,  TAMFT-3A and TAMFT-3B2 homeologs are associated with wheat preharvest sprouting.]\"} ], \"id\": \"e314\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"40\", \"fromConcept\": \"134\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.605947494506836\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Comparative analyses of the genetic intervals of identified QTLs with that of already identified and cloned PHS resistance gene intervals using IWGSC RefSeq v2.0 identified MFT-A1b (in QTL interval QPhs.lrdc-3A.1) and AGO802A (in QTL interval QPhs.lrdc-3A.2) on chromosome 3A,  MFT-3B-1 (in QTL interval QPhs.lrdc-3B.1) on chromosome 3B,  and AGO802D,  HUB1,  TaVp1-D1 (in QTL interval QPhs.lrdc-3D.1) and TaMyb10-D1 (in QTL interval QPhs.lrdc-3D.2) on chromosome 3D.]\"} ], \"id\": \"e315\", \"contexts\": { } , 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\"e433\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"34\", \"fromConcept\": \"185\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"61.51027686953785\"} , { \"attrname\": \"PMID\", \"value\": \"35628114\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"61.51027686953785\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[WRINKLED1 (WRI1),  an APETALA2 (AP2) transcription factor (TF),  critically regulates the processes related to fatty acid synthesis,  storage oil accumulation,  and seed development in plants.]\"} ], \"id\": \"e434\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"71\", \"fromConcept\": \"185\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"21.869455965759244\"} , { \"attrname\": \"PMID\", \"value\": \"34558070\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"21.869455965759244\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The starch morphology assessment revealed that starch from mutant seeds was more wrinkled,  increasing its susceptibility to digestion.]\"} ], \"id\": \"e435\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"199\", \"fromConcept\": \"185\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"5\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"486.8449808917794\"} , { \"attrname\": \"PMID\", \"value\": \"35628114\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"486.8449808917794\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Conclusively,  TaWRI1L2,  rather than TaWRI1L1,  was the key transcriptional factor in the regulation of grain fatty acid synthesis in bread wheat.,  Cloning and Functional Analysis of TaWRI1Ls,  the Key Genes for Grain Fatty Acid Synthesis in Bread Wheat.,  Overexpression of TaWRI1L2 compensated for the functional loss of AtWRI1 in an Arabidopsis mutant and restored the wild-type phenotypes of seed shape,  generation,  and fatty acid synthesis and accumulation.,  WRINKLED1 (WRI1),  an APETALA2 (AP2) transcription factor (TF),  critically regulates the processes related to fatty acid synthesis,  storage oil accumulation,  and seed development in plants.,  Knockout of TaWRI1L2 reduced grain size,  1000 grain weight,  and grain fatty acid synthesis in bread wheat.]\"} ], \"id\": \"e436\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"200\", \"fromConcept\": \"185\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"165.08918002530663\"} , { \"attrname\": \"PMID\", \"value\": \"32450804\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"82.54459001265332\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[An oat endosperm homolog of WRI1 (AsWRI1) expressed from the endosperm-specific HMW1Dx5 promoter resulted in drastic changes in carbon allocation in wheat grains,  with reduced seed weight and a wrinkled seed phenotype.]\"} ], \"id\": \"e437\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"201\", \"fromConcept\": \"185\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"97.49471220671512\"} , { \"attrname\": \"PMID\", \"value\": \"35628114\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"97.49471220671512\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Overexpression of TaWRI1L2 compensated for the functional loss of AtWRI1 in an Arabidopsis mutant and restored the wild-type phenotypes of seed shape,  generation,  and fatty acid synthesis and accumulation.]\"} ], \"id\": \"e438\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"202\", \"fromConcept\": \"185\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"58.96673365872903\"} , { \"attrname\": \"PMID\", \"value\": \"35628114\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"58.96673365872903\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Knockout of TaWRI1L2 reduced grain size,  1000 grain weight,  and grain fatty acid synthesis in bread wheat.]\"} ], \"id\": \"e439\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"203\", \"fromConcept\": \"185\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": 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\"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"204\", \"fromConcept\": \"185\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"298.79663461463406\"} , { \"attrname\": \"PMID\", \"value\": \"35406869\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"298.79663461463406\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Mature AsWRI1-wheat grains also had reduced weight,  were wrinkled and had a shrunken endosperm and X-ray tomography revealed that the proportion of endosperm was decreased while that of the aleurone was increased.]\"} ], \"id\": \"e442\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"205\", \"fromConcept\": \"185\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"3\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", 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\"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"199\", \"fromConcept\": \"187\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"5\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"486.8449808917794\"} , { \"attrname\": \"PMID\", \"value\": \"35628114\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"486.8449808917794\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Conclusively,  TaWRI1L2,  rather than TaWRI1L1,  was the key transcriptional factor in the regulation of grain fatty acid synthesis in bread wheat.,  Cloning and Functional Analysis of TaWRI1Ls,  the Key Genes for Grain Fatty Acid Synthesis in Bread Wheat.,  Overexpression of TaWRI1L2 compensated for the functional loss of AtWRI1 in an Arabidopsis mutant and restored the wild-type phenotypes of seed shape,  generation,  and fatty acid synthesis and accumulation.,  WRINKLED1 (WRI1),  an APETALA2 (AP2) transcription factor (TF),  critically regulates the processes related to fatty acid synthesis,  storage oil accumulation,  and seed development in plants.,  Knockout of TaWRI1L2 reduced grain size,  1000 grain weight,  and grain fatty acid synthesis in bread wheat.]\"} ], \"id\": \"e446\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"201\", \"fromConcept\": \"187\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"97.49471220671512\"} , { \"attrname\": \"PMID\", \"value\": \"35628114\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"97.49471220671512\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Overexpression of TaWRI1L2 compensated for the functional loss of AtWRI1 in an Arabidopsis mutant and restored the wild-type phenotypes of seed shape,  generation,  and fatty acid synthesis and accumulation.]\"} ], \"id\": \"e447\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"202\", \"fromConcept\": \"187\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"58.96673365872903\"} , { \"attrname\": \"PMID\", \"value\": \"35628114\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"58.96673365872903\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Knockout of TaWRI1L2 reduced grain size,  1000 grain weight,  and grain fatty acid synthesis in bread wheat.]\"} ], \"id\": \"e448\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"203\", \"fromConcept\": \"187\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"104.98170673950972\"} , { \"attrname\": \"PMID\", \"value\": \"35628114\"} , { \"attrname\": 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[\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"119\", \"fromConcept\": \"187\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"50.960130353899785\"} , { \"attrname\": \"PMID\", \"value\": \"35628114\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"50.960130353899785\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Knockout of TaWRI1L2 reduced grain size,  1000 grain weight,  and grain fatty acid synthesis in bread wheat.]\"} ], \"id\": \"e451\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"205\", \"fromConcept\": \"187\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"125.9500378475309\"} , { \"attrname\": \"PMID\", \"value\": \"35406869\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"125.9500378475309\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The developing caryopses of AsWRI1-wheat grains had increased triacylglycerol content and decreased starch content compared to the control.]\"} ], \"id\": \"e452\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"36\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"5\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"1219.9538361571686\"} , { \"attrname\": \"PMID\", \"value\": \"24932489,  24069187\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"842.497691464232\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[All these evidences suggest that GmMFT may be a negative regulator of seed germination.  ,  Recent studies in both Arabidopsis and wheat have uncovered a new role of MOTHER OF FT AND TFL1 (MFT) in seed germination.,  Detailed expression analysis showed that the mRNA level of GmMFT increased with seed development but declined during seed germination.,  Ectopic expression of GmMFT CDS in Arabidopsis moderately inhibited seed germination.,  TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.]\"} ], \"id\": \"e453\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"34\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"68.98936846721062\"} , { \"attrname\": \"PMID\", \"value\": \"24932489\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"68.98936846721062\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Detailed expression analysis showed that the mRNA level of GmMFT increased with seed development but declined during seed germination.]\"} ], \"id\": \"e454\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"35\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"885.1156432881253\"} , { \"attrname\": \"PMID\", \"value\": \"27162497,  24069187\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"524.9402428538087\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars.]\"} ], \"id\": \"e455\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"33\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"4\"} , { \"attrname\": \"CoSenNum\", \"value\": \"4\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"942.5244148797237\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"27162497,  35698038,  35971881,  24069187\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"422.90530377243704\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[These findings suggest that TaMFT-A1 may invoke different mechanisms for controlling seed dormancy\\/germination among winter wheat cultivars.  ,  Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.,  QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.]\"} ], \"id\": \"e456\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"39\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"15.68675708770752\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In a complementation analysis,  high levels of MFT expression were correlated with a low germination index in T1 seeds.,  MFT-3A expression levels in a dormant cultivar used for the detection of the QTL were higher after physiological maturity; this increased expression correlated with a single nucleotide polymorphism in the promoter region.,  Furthermore,  precocious germination of isolated immature embryos was suppressed by transient introduction of MFT driven by the maize (Zea mays) ubiquitin promoter.,  Taken together,  these results suggest that MFT plays an important role in the regulation of germination in wheat.  ,  In situ hybridization analysis indicated that MFT was exclusively expressed in the scutellum and coleorhiza.,  Mapping analysis showed that MFT on chromosome 3A (MFT-3A) colocalized with the seed dormancy quantitative trait locus (QTL) QPhs.ocs-3A.1.,  We found that a wheat homolog of MOTHER OF FT AND TFL1 (MFT) was upregulated after physiological maturity in dormant seeds grown at the lower temperature.]\"} ], \"id\": \"e457\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"40\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.605947494506836\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Comparative analyses of the genetic intervals of identified QTLs with that of already identified and cloned PHS resistance gene intervals using IWGSC RefSeq v2.0 identified MFT-A1b (in QTL interval QPhs.lrdc-3A.1) and AGO802A (in QTL interval QPhs.lrdc-3A.2) on chromosome 3A,  MFT-3B-1 (in QTL interval QPhs.lrdc-3B.1) on chromosome 3B,  and AGO802D,  HUB1,  TaVp1-D1 (in QTL interval QPhs.lrdc-3D.1) and TaMyb10-D1 (in QTL interval QPhs.lrdc-3D.2) on chromosome 3D.]\"} ], \"id\": \"e458\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"44\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.334551811218262\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[QTLs for seed dormancy were detected on chromosomes 1B (QDor-1B) and 4A (QDor-4A),  in addition to a QTL on chromosome 3A,  which was recently cloned as TaMFT-3A.]\"} ], \"id\": \"e459\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"41\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"42.871280670166016\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Previous research has shown TaMFT-3A as having a large impact on PHS resistance.,  Markers for both TaMFT-3A and TaMFT-3B2 should be used in selecting for increased wheat dormancy and PHS resistance.  ,  In this study,  the TaMFT (3A,  3B1,  3B2,  3D),  TaMKK3-4A,  and TaVP1-3B genes were assessed for association with PHS in a double-haploid line (DHL) hard red winter wheat population derived from a BC1 cross between the cultivars Loma and Warhorse,  where Loma was the recurrent and PHS susceptible parent.,  The PHS variation was associated with the TaMFT-A and the B2 homeolog with Loma carrying mutant forms of each gene.,  In the current study,  the TaMFT-3A and TaMFT-3B2 alleles each explained 14% of observed PHS variation.,  No sequence variation between Loma and Warhorse was detected in the exons of the TaMFT-B1 and D homeologs.,  TAMFT-3A and TAMFT-3B2 homeologs are associated with wheat preharvest sprouting.]\"} ], \"id\": \"e460\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"45\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"12.827485084533691\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We used a DNA marker to detect the 'Zenkoujikomugi'-type (Zen-type) SNP and examined the genotype of MFT-3A in Japanese wheat varieties,  and we found that 169 of 324 varieties carry the Zen-type SNP.,  In the wheat (Triticum aestivum L.) cultivar 'Zenkoujikomugi',  a single nucleotide polymorphism (SNP) in the promoter of MOTHER OF FT AND TFL1 on chromosome 3A (MFT-3A) causes an increase in the level of gene expression,  resulting in strong grain dormancy.,  To examine the relationship between MFT-3A genotype and grain dormancy,  we performed a germination assay in three wheat-growing seasons.]\"} ], \"id\": \"e461\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"46\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.101876258850098\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Response of embryo-half seeds to exogenous abscisic acid (ABA) indicates that ABA sensitivity is correlated with whole-seed germinability,  which can be explained in part by genotypes of MOTHER OF FT AND TFL (MFT) allele modulating ABA signaling of wheat seeds.]\"} ], \"id\": \"e462\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"43\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.558441162109375\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Phylogenetic analysis classified the PEBP genes into four subfamilies (PEBP-like,  MFT-like,  TFL-like and FT-like); the PEBP-like subfamily was identified as a new subfamily with genes in this subfamily were conserved in plants.]\"} ], \"id\": \"e463\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"48\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.746791839599609\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The known PH regulation genes Rht-B and Rht-D,  and the known seed dormancy regulation genes TaMFT can be selected as candidate gene.]\"} ], \"id\": \"e464\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"42\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"34.82606887817383\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[These findings suggest that TaMFT-A1 may invoke different mechanisms for controlling seed dormancy\\/germination among winter wheat cultivars.  ,  Furthermore,  TaMFT-A1,  previously reported to regulate seed dormancy and pre-harvest sprouting in spring wheat cultivars,  was mapped tightly associated with the peak of QTsg.osu-3A.,  However,  allelic variation in TaMFT-A1 between the two winter wheat cultivars differed from that was observed in spring wheat cultivars.,  TaMFT-A1 transcript levels were up-regulated by high temperature but down-regulated by low temperature or seed storage time.,  TaMFT-A1 is associated with seed germination sensitive to temperature in winter wheat.,  The Jagger TaMFT-A1 allele is a novel haplotype and appears extensively in winter wheat cultivars.,  There were 87 SNPs (single nucleotide polymorphisms) and 12 indels (insertions\\/deletions) in TaMFT-A1 between the Jagger allele for high germination and the 2174 allele for low germination in the after-ripened seeds,  in comparison with 2 SNPs between the two alleles for differential pre-harvest sprouting in spring wheat cultivars.]\"} ], \"id\": \"e465\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"47\", \"fromConcept\": \"167\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.334551811218262\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We found that CACTAs have inserted into many agronomically important genes,  such as seed dormancy gene TaMFT and vernalization gene TaVrn1,  indicating the important role of CACTAs in modern wheat adaptation.  ]\"} ], \"id\": \"e466\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"39\", \"fromConcept\": \"197\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} ], \"id\": \"e467\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"published_in\"} , { \"toConcept\": \"50\", \"fromConcept\": \"206\", \"attributes\": [{ \"attrname\": \"%Identity_target\", \"value\": \"61.7143\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": 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\"percent-identical\", \"value\": \"66.854\"} , { \"attrname\": \"subject-end\", \"value\": \"174.0\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"e-value\", \"value\": \"3.14E-84\"} , { \"attrname\": \"alignment-length\", \"value\": \"178.0\"} , { \"attrname\": \"subject-start\", \"value\": \"1.0\"} , { \"attrname\": \"bit-score\", \"value\": \"245.0\"} , { \"attrname\": \"number-mismatch\", \"value\": \"50.0\"} , { \"attrname\": \"number-gap-open\", \"value\": \"2.0\"} , { \"attrname\": \"query-start\", \"value\": \"1.0\"} , { \"attrname\": \"query-end\", \"value\": \"173.0\"} ], \"id\": \"e481\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} , { \"toConcept\": \"101\", \"fromConcept\": \"208\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"5.263816833496094\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[This behaviour differs subtly from that of seeds overwintered in the soil seed bank to spread the period of potential germination in the seed population (existing seed bank and newly dispersed).]\"} ], \"id\": \"e482\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"101\", \"fromConcept\": \"33\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.942961692810059\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Seed dormancy cycling plays a crucial role in the lifecycle timing of many plants.]\"} ], \"id\": \"e483\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"102\", \"fromConcept\": \"38\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"3.6698365211486816\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We also find that SPT regulates expression of five transcription factor encoding genes:  ABA-INSENSITIVE4 (ABI4) and ABI5,  which mediate ABA signaling; REPRESSOR-OF-GA (RGA) and RGA-LIKE3 involved in gibberellic acid signaling; and MOTHER-OF-FT-AND-TFL1 (MFT) that we show here promotes Arabidopsis seed dormancy.]\"} ], \"id\": \"e484\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"102\", \"fromConcept\": \"36\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"4.2112345695495605\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We previously showed that the SPATULA (SPT) transcription factor plays a key role in regulating seed germination.]\"} ], \"id\": \"e485\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"102\", \"fromConcept\": \"37\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"5.060056686401367\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Although our understanding of dormancy breakage in mature seeds is well advanced,  relatively little is known about the mechanisms involved in establishing dormancy during seed maturation.]\"} ], \"id\": \"e486\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"102\", \"fromConcept\": \"34\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"4.369241714477539\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The establishment of dormancy occurs during seed development and involves both genetic and environmental factors that impact on the ratio of two antagonistic phytohormones:  abscisic acid (ABA),  which promotes dormancy,  and gibberellic acid,  which promotes germination.,  Here we investigate its role during seed development and find that,  surprisingly,  it has opposite roles in setting dormancy in Landsberg erecta and Columbia Arabidopsis ecotypes.]\"} ], \"id\": \"e487\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"102\", \"fromConcept\": \"209\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"6.693953990936279\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We also find that SPT regulates expression of five transcription factor encoding genes:  ABA-INSENSITIVE4 (ABI4) and ABI5,  which mediate ABA signaling; REPRESSOR-OF-GA (RGA) and RGA-LIKE3 involved in gibberellic acid signaling; and MOTHER-OF-FT-AND-TFL1 (MFT) that we show here promotes Arabidopsis seed dormancy.]\"} ], \"id\": \"e488\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"102\", \"fromConcept\": \"65\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"5.060056686401367\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Although our understanding of dormancy breakage in mature seeds is well advanced,  relatively little is known about the mechanisms involved in establishing dormancy during seed maturation.]\"} ], \"id\": \"e489\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"102\", \"fromConcept\": \"33\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"8.272364616394043\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Each of these routes has different impacts and this in turn explains the opposite effect of SPT on seed dormancy of the two ecotypes analyzed here.  ,  We also find that SPT regulates expression of five transcription factor encoding genes:  ABA-INSENSITIVE4 (ABI4) and ABI5,  which mediate ABA signaling; REPRESSOR-OF-GA (RGA) and RGA-LIKE3 involved in gibberellic acid signaling; and MOTHER-OF-FT-AND-TFL1 (MFT) that we show here promotes Arabidopsis seed dormancy.]\"} ], \"id\": \"e490\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"103\", \"fromConcept\": \"113\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"2.627013921737671\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Our results are consistent with a seed-specific response to seasonal temperature patterns (temporal sensing) involving the gene DELAY OF GERMINATION 1 (DOG1) that indicates the correct season,  and concurrent temporally driven co-opted mechanisms that sense spatial signals,  i.e. nitrate,  via CBL-INTERACTING PROTEIN KINASE 23 (CIPK23) phosphorylation of the NITRATE TRANSPORTER 1 (NRT1.1),  and light,  via PHYTOCHROME A (PHYA).]\"} ], \"id\": \"e491\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"103\", \"fromConcept\": \"33\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"16.07489585876465\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Temperature,  light and nitrate sensing coordinate Arabidopsis seed dormancy cycling,  resulting in winter and summer annual phenotypes.]\"} ], \"id\": \"e492\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"104\", \"fromConcept\": \"38\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"6.502867698669434\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Endogenous ABA decreased along with positive ABA signaling as expression of ABI2,  ABI4,  and ABA catabolism (CYP707A2) and GA synthesis (GA3ox1) genes increased.,  The expression of SNF1-related protein kinases,  SnrK 2.1 and 2.4,  also increased consistent with enhanced ABA signaling and sensitivity being modulated by seasonal soil temperature.,  The results were consistent with abscisic acid (ABA) signaling linked to deep dormancy in winter being 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quality and yield of rice seeds.,  Together,  these results indicate that protein modification by phosphorylation plays a key role in controlling seed dormancy.  ,  Recently,  MKK3 has been reported to be involved in the regulation of seed dormancy,  but its mechanism of action is unclear.,  Knock-out experiments confirmed that MKK3,  MAPK7,  and MAPK14 were involved in the regulation of seed dormancy.]\"} ], \"id\": \"e590\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"96\", \"fromConcept\": \"65\", \"attributes\": [{ \"attrname\": \"TFIDF\", \"value\": \"6.001232624053955\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Our results showed that MKKK62 negatively controls seed dormancy in rice,  and that during the germination stage and the late stage of seed maturation,  ABA sensitivity and OsMFT transcription are negatively controlled by MKKK62.]\"} ], \"id\": \"e591\", \"contexts\": { } , \"evidences\": [\"Text 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{ \"attrname\": \"query-start\", \"value\": \"2.0\"} , { \"attrname\": \"query-end\", \"value\": \"174.0\"} ], \"id\": \"e615\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} , { \"toConcept\": \"57\", \"fromConcept\": \"207\", \"attributes\": [{ \"attrname\": \"percent-identical\", \"value\": \"48.571\"} , { \"attrname\": \"subject-end\", \"value\": \"175.0\"} , { \"attrname\": \"e-value\", \"value\": \"6.75E-54\"} , { \"attrname\": \"alignment-length\", \"value\": \"175.0\"} , { \"attrname\": \"subject-start\", \"value\": \"3.0\"} , { \"attrname\": \"bit-score\", \"value\": \"168.0\"} , { \"attrname\": \"number-mismatch\", \"value\": \"86.0\"} , { \"attrname\": \"number-gap-open\", \"value\": \"3.0\"} , { \"attrname\": \"query-start\", \"value\": \"2.0\"} , { \"attrname\": \"query-end\", \"value\": \"174.0\"} ], \"id\": \"e616\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} , { \"toConcept\": \"148\", \"fromConcept\": \"235\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"353.9581265834786\"} , { \"attrname\": \"PMID\", \"value\": \"35305221\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"353.9581265834786\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[TaHsfA6b-4D relocalizes intracellularly upon heat stress and play a significant role in linking the heat stress response to unfolded-protein response so as to maintain cellular homeostasis.]\"} ], \"id\": \"e617\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"235\", \"fromConcept\": \"147\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"498.9894734593654\"} , { \"attrname\": \"PMID\", \"value\": \"35305221\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"283.6644257431326\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Thus,  these studies together suggest that TaHsfA6b-4D may relocalize intracellularly upon heat stress and may play a significant role in linking the unfolded-protein response with heat stress response so as to maintain protein homeostasis inside the cell under heat stress.  ,  TaHsfA6b-4D relocalizes intracellularly upon heat stress and play a significant role in linking the heat stress response to unfolded-protein response so as to maintain cellular homeostasis.]\"} ], \"id\": \"e618\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"236\", \"fromConcept\": \"37\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"3\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"723.6122487353346\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"10527428,  25211528,  20448474\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"297.1530552006202\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Genetic and molecular studies have shown that the Arabidopsis ABSCISIC ACID-INSENSITIVE3 (ABI3) protein plays a prominent role in the control of seed maturation.,  The plant-specific transcription factor ABSCISIC ACID INSENSITIVE3 (ABI3) or the maize ortholog VIVIPAROUS1 (VP1) is known to regulate seed maturation and germination in concert with the phytohormone abscisic acid (ABA) but is also evolutionarily conserved among land plants including non-seed plants.]\"} ], \"id\": \"e619\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"236\", \"fromConcept\": \"36\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"55.25791852350039\"} , { \"attrname\": \"PMID\", \"value\": \"18506099\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"55.25791852350039\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Viviparous 1 (Vp1) of maize is known to encode a transcription factor VP1 that controls seed germination.]\"} ], \"id\": \"e620\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"34\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"4\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"324.7445532710651\"} , { \"attrname\": \"PMID\", \"value\": \"25211528,  8631935,  12119408,  33249604\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"193.29574575143852\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In addition,  VP1 has pleiotropic effects on seed development that are not related to ABA.,  The maize (Zea mays) Viviparous 1 (Vp1) transcription factor has been shown previously to be a major regulator of seed development,  simultaneously activating embryo maturation and repressing germination.]\"} ], \"id\": \"e621\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"38\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"105.59747202314975\"} , { \"attrname\": \"PMID\", \"value\": \"31872216\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"105.59747202314975\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Ethylene appeared to regulate the expression of TaEXPA3 and thereby root growth through its control of coleoptile ABA metabolism,  and root ABA signaling via expression of TaABI3 and TaABI5.]\"} ], \"id\": \"e622\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"65\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"3\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"723.6122487353346\"} , { \"attrname\": \"PMID\", \"value\": \"10527428,  25211528,  20448474\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"297.1530552006202\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Genetic and molecular studies have shown that the Arabidopsis ABSCISIC ACID-INSENSITIVE3 (ABI3) protein plays a prominent role in the control of seed maturation.,  The plant-specific transcription factor ABSCISIC ACID INSENSITIVE3 (ABI3) or the maize ortholog VIVIPAROUS1 (VP1) is known to regulate seed maturation and germination in concert with the phytohormone abscisic acid (ABA) but is also evolutionarily conserved among land plants including non-seed plants.]\"} ], \"id\": \"e623\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"243\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"274.4419365357753\"} , { \"attrname\": \"PMID\", \"value\": \"12750793\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"274.4419365357753\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Group 3 chromosomes have received attention as carrying the R genes for seed-coat color and the taVp1 genes that are orthologous to the maize Vp1 gene which encode a dormancy-related transcription factor.]\"} ], \"id\": \"e624\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"33\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"4\"} , { \"attrname\": \"CoSenNum\", \"value\": \"3\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"1432.3456956653936\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"12750793,  25211528,  11413225,  33249604\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"926.380474266829\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[No correlation was found between the expression level of TaVP1,  orthologue of ABA insensitive3 (ABI3),  and seed dormancy.,  The objectives of the present study were to map quantitative trait loci (QTLs) for seed dormancy on chromosome 3A and to investigate an association between taVp1 or R-A1 and the QTLs detected.,  Mapping QTLs for seed dormancy and the Vp1 homologue on chromosome 3A in wheat.]\"} ], \"id\": \"e625\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"244\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"14.233637809753418\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[ABI3 is a key factor in the activation of seed development and repression of germination in Arabidopsis.,  An ABI3-interacting protein (AIP2) could polyubiquitinate ABI3,  impair seed dormancy and promote seed germination in Arabidopsis.,  Furthermore,  the expression of upstream genes ABI1 and ABI2 were upregulated,  whereas that of downstream genes ABI3 and ABI5 were downregulated in both TaAIP2A and TaAIP2B complemented lines upon ABA treatment.]\"} ], \"id\": \"e626\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"245\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"11.145476341247559\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Hexaploid wheat possesses three Vp1 homoeologues (TaVp1):  TaVp-A1,  TaVp-B1 and TaVp-D1.,  In this study,  we attempted to characterize the molecular properties of TaVp1 in a highly dormant wheat cultivar,  Minamino-komugi (Minamino).,  RT-PCR analyses showed that TaVp1 was highly expressed in Minamino embryos in maturing seeds but much less in roots and leaves of seedlings.,  Viviparous 1 (Vp1) of maize is known to encode a transcription factor VP1 that controls seed germination.,  The level of TaVp1 mRNA was high when the embryos were treated with ABA but markedly decreased in water-imbibed mature embryos whose dormancy had been broken.,  These results suggest that the majority of TaVp1,  especially TaVp-B1,  are properly spliced and may function as a transcription factor playing an important role on dormancy in Minamino.]\"} ], \"id\": \"e627\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"66\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.746791839599609\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[No correlation was found between the expression level of TaVP1,  orthologue of ABA insensitive3 (ABI3),  and seed dormancy.]\"} ], \"id\": \"e628\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"246\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"16.857280731201172\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Isolation of a VP1 homologue from wheat and analysis of its expression in embryos of dormant and non-dormant cultivars.]\"} ], \"id\": \"e629\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"247\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.40621280670166\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Thus,  we describe changes in the level of transcripts encoding wheat Viviparous 1 (Vp1) and other interacting proteins.]\"} ], \"id\": \"e630\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"248\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"9.415903091430664\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Dormancy retention during imbibition,  however,  is associated with modulations of both ABA level and responsiveness via expression of specific ABA metabolism (TaNCED2 and TaCYP707A1) and signalling (TaPYL2,  TaSnRK2,  TaABI3,  TaABI4 and TaABI5) genes,  and alterations of GA levels and responsiveness through expression of specific GA biosynthesis (TaGA20ox1,  TaGA20ox2 and TaGA3ox2) and signalling (TaGID1 and TaGID2) genes,  respectively.]\"} ], \"id\": \"e631\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"249\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"11.145476341247559\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Developing embryos from transgenic wheat grains expressing the Avena fatua Vp1 gene showed enhanced responsiveness to applied abscisic acid compared with the control.,  The maize (Zea mays) Viviparous 1 (Vp1) transcription factor has been shown previously to be a major regulator of seed development,  simultaneously activating embryo maturation and repressing germination.,  Hexaploid bread wheat (Triticum aestivum) caryopses are characterized by relatively weak embryo dormancy and are susceptible to preharvest sprouting (PHS),  a phenomenon that is phenotypically similar to the maize vp1 mutation.]\"} ], \"id\": \"e632\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"250\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"33.73727798461914\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Genetic and molecular studies have shown that the Arabidopsis ABSCISIC ACID-INSENSITIVE3 (ABI3) protein plays a prominent role in the control of seed maturation.,  The ABI3 protein and its orthologues from various other plant species share four domains of high sequence identity,  including three basic domains designated as B1,  B2 and B3.,  A new abi3 allele,  abi3-7,  was generated by mutagenizing abi3-1 seeds.,  Accumulation of AtEm6 protein is more sensitive to abi3-7 mutation than AtEm1.,  The leaky abi3-1 mutation is a single amino acid substitution within the B3 domain.,  The abi3-7 line contains,  in addition to the abi3-1 mutation,  a point mutation that converts residue Ala-458 into Thr within the B2 domain of the ABI3 protein.,  Importance of the B2 domain of the Arabidopsis ABI3 protein for Em and 2S albumin gene regulation.,  This Ala residue is absolutely conserved in all known ABI3 orthologues.,  Abi3-7 seeds display reductions in dormancy and in sensitivity to abscisic acid which are intermediate between those of the leaky abi3-1 and of the severe abi3-4 and abi3-5 mutants.,  These results provide genetic evidence for the importance of the conserved B2 domain for ABI3 function in vivo.  ,  Both At2S1 and At2S2 mRNA are reduced in abi3-7,  but distribution of At2S2 is spatially restricted.]\"} ], \"id\": \"e633\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"251\", \"fromConcept\": \"236\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"26.830734252929688\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The objectives of the present study were to map quantitative trait loci (QTLs) for seed dormancy on chromosome 3A and to investigate an association between taVp1 or R-A1 and the QTLs detected.,  Group 3 chromosomes have received attention as carrying the R genes for seed-coat color and the taVp1 genes that are orthologous to the maize Vp1 gene which encode a dormancy-related transcription factor.,  Although QPhs.ocs-2 was loosely linked to taVp1 by around 50 cM,  they are clearly distinct genes.,  The taVp1 locus was located in the middle of the long arm,  about 85 cM from the centromere.,  Nineteen marker loci,  including taVp1,  were mapped on chromosome 3A.,  Mapping QTLs for seed dormancy and the Vp1 homologue on chromosome 3A in wheat.,  Hence it was concluded that the high dormancy associated with chromosome 3A of Zen is ascribable to QPhs.ocs-1 on the short arm but is not due to the direct contribution of either the taVp1 or R-A1 locus.  ]\"} ], \"id\": \"e634\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"237\", \"fromConcept\": \"252\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"753.7455685304885\"} , { \"attrname\": \"PMID\", \"value\": \"23262780\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"753.7455685304885\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Induction of DREB2A pathway with repression of E2F,  jasmonic acid biosynthetic and photosynthesis pathways in cold acclimation-specific freeze-resistant wheat crown.]\"} ], \"id\": \"e635\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"237\", \"fromConcept\": \"210\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"189.92463478751688\"} , { \"attrname\": \"PMID\", \"value\": \"23262780\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"189.92463478751688\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Induction of DREB2A pathway with repression of E2F,  jasmonic acid biosynthetic and photosynthesis pathways in cold acclimation-specific freeze-resistant wheat crown.]\"} ], \"id\": \"e636\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"237\", \"fromConcept\": \"253\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"313.08989436159027\"} , { \"attrname\": \"PMID\", \"value\": \"23262780\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"313.08989436159027\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[We propose that the DREB2A,  E2F,  jasmonic acid biosynthesis,  and photosynthetic pathways are critical for discrimination between cold-acclimated lines varying in freeze survival.  ]\"} ], \"id\": \"e637\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"237\", \"fromConcept\": \"254\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"114.87126130591696\"} , { \"attrname\": \"PMID\", \"value\": \"29089392\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"114.87126130591696\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In Arabidopsis (Arabidopsis thaliana) plants growing under normal conditions,  DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN2A (DREB2A) is present at low levels because it is ubiquitinated and destabilized by DREB2A INTERACTING PROTEIN1 (DRIP1) and DRIP2 through 26S proteasome-mediated proteolysis.,  Drought stress counteracts the ubiquitination and proteolysis of DREB2A,  thus allowing the accumulation of sufficient amounts of DREB2A protein to activate downstream gene expression.]\"} ], \"id\": \"e638\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"237\", \"fromConcept\": \"38\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"40.52636250761134\"} , { \"attrname\": \"PMID\", \"value\": \"27001921\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"40.52636250761134\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[This QTL harbored several genes previously reported to be involved in ABA signaling,  interaction with DREB2A and root hydraulics.]\"} ], \"id\": \"e639\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"34\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"4\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"324.7445532710651\"} , { \"attrname\": \"PMID\", \"value\": \"25211528,  8631935,  12119408,  33249604\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"193.29574575143852\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In addition,  VP1 has pleiotropic effects on seed development that are not related to ABA.,  The maize (Zea mays) Viviparous 1 (Vp1) transcription factor has been shown previously to be a major regulator of seed development,  simultaneously activating embryo maturation and repressing germination.]\"} ], \"id\": \"e640\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"37\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"3\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"723.6122487353346\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"10527428,  25211528,  20448474\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"297.1530552006202\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Genetic and molecular studies have shown that the Arabidopsis ABSCISIC ACID-INSENSITIVE3 (ABI3) protein plays a prominent role in the control of seed maturation.,  The plant-specific transcription factor ABSCISIC ACID INSENSITIVE3 (ABI3) or the maize ortholog VIVIPAROUS1 (VP1) is known to regulate seed maturation and germination in concert with the phytohormone abscisic acid (ABA) but is also evolutionarily conserved among land plants including non-seed plants.]\"} ], \"id\": \"e641\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"38\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"177.32296309051344\"} , { \"attrname\": \"PMID\", \"value\": \"31872216\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"105.59747202314975\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Ethylene appeared to regulate the expression of TaEXPA3 and thereby root growth through its control of coleoptile ABA metabolism,  and root ABA signaling via expression of TaABI3 and TaABI5.]\"} ], \"id\": \"e642\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"36\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"55.25791852350039\"} , { \"attrname\": \"PMID\", \"value\": \"18506099\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"55.25791852350039\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Viviparous 1 (Vp1) of maize is known to encode a transcription factor VP1 that controls seed germination.]\"} ], \"id\": \"e643\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"243\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"274.4419365357753\"} , { \"attrname\": \"PMID\", \"value\": \"12750793\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"274.4419365357753\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Group 3 chromosomes have received attention as carrying the R genes for seed-coat color and the taVp1 genes that are orthologous to the maize Vp1 gene which encode a dormancy-related transcription factor.]\"} ], \"id\": \"e644\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"33\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"4\"} , { \"attrname\": \"CoSenNum\", \"value\": \"3\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"1432.3456956653936\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"12750793,  25211528,  11413225,  33249604\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"926.380474266829\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[No correlation was found between the expression level of TaVP1,  orthologue of ABA insensitive3 (ABI3),  and seed dormancy.,  The objectives of the present study were to map quantitative trait loci (QTLs) for seed dormancy on chromosome 3A and to investigate an association between taVp1 or R-A1 and the QTLs detected.,  Mapping QTLs for seed dormancy and the Vp1 homologue on chromosome 3A in wheat.]\"} ], \"id\": \"e645\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"65\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"3\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"723.6122487353346\"} , { \"attrname\": \"PMID\", \"value\": \"10527428,  25211528,  20448474\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"297.1530552006202\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Genetic and molecular studies have shown that the Arabidopsis ABSCISIC ACID-INSENSITIVE3 (ABI3) protein plays a prominent role in the control of seed maturation.,  The plant-specific transcription factor ABSCISIC ACID INSENSITIVE3 (ABI3) or the maize ortholog VIVIPAROUS1 (VP1) is known to regulate seed maturation and germination in concert with the phytohormone abscisic acid (ABA) but is also evolutionarily conserved among land plants including non-seed plants.]\"} ], \"id\": \"e646\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"248\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"9.415903091430664\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Dormancy retention during imbibition,  however,  is associated with modulations of both ABA level and responsiveness via expression of specific ABA metabolism (TaNCED2 and TaCYP707A1) and signalling (TaPYL2,  TaSnRK2,  TaABI3,  TaABI4 and TaABI5) genes,  and alterations of GA levels and responsiveness through expression of specific GA biosynthesis (TaGA20ox1,  TaGA20ox2 and TaGA3ox2) and signalling (TaGID1 and TaGID2) genes,  respectively.]\"} ], \"id\": \"e647\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"247\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.40621280670166\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Thus,  we describe changes in the level of transcripts encoding wheat Viviparous 1 (Vp1) and other interacting proteins.]\"} ], \"id\": \"e648\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"245\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"11.145476341247559\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Hexaploid wheat possesses three Vp1 homoeologues (TaVp1):  TaVp-A1,  TaVp-B1 and TaVp-D1.,  In this study,  we attempted to characterize the molecular properties of TaVp1 in a highly dormant wheat cultivar,  Minamino-komugi (Minamino).,  RT-PCR analyses showed that TaVp1 was highly expressed in Minamino embryos in maturing seeds but much less in roots and leaves of seedlings.,  Viviparous 1 (Vp1) of maize is known to encode a transcription factor VP1 that controls seed germination.,  The level of TaVp1 mRNA was high when the embryos were treated with ABA but markedly decreased in water-imbibed mature embryos whose dormancy had been broken.,  These results suggest that the majority of TaVp1,  especially TaVp-B1,  are properly spliced and may function as a transcription factor playing an important role on dormancy in Minamino.]\"} ], \"id\": \"e649\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"251\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"26.830734252929688\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The objectives of the present study were to map quantitative trait loci (QTLs) for seed dormancy on chromosome 3A and to investigate an association between taVp1 or R-A1 and the QTLs detected.,  Group 3 chromosomes have received attention as carrying the R genes for seed-coat color and the taVp1 genes that are orthologous to the maize Vp1 gene which encode a dormancy-related transcription factor.,  Although QPhs.ocs-2 was loosely linked to taVp1 by around 50 cM,  they are clearly distinct genes.,  The taVp1 locus was located in the middle of the long arm,  about 85 cM from the centromere.,  Nineteen marker loci,  including taVp1,  were mapped on chromosome 3A.,  Mapping QTLs for seed dormancy and the Vp1 homologue on chromosome 3A in wheat.,  Hence it was concluded that the high dormancy associated with chromosome 3A of Zen is ascribable to QPhs.ocs-1 on the short arm but is not due to the direct contribution of either the taVp1 or R-A1 locus.  ]\"} ], \"id\": \"e650\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"244\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"14.233637809753418\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[ABI3 is a key factor in the activation of seed development and repression of germination in Arabidopsis.,  An ABI3-interacting protein (AIP2) could polyubiquitinate ABI3,  impair seed dormancy and promote seed germination in Arabidopsis.,  Furthermore,  the expression of upstream genes ABI1 and ABI2 were upregulated,  whereas that of downstream genes ABI3 and ABI5 were downregulated in both TaAIP2A and TaAIP2B complemented lines upon ABA treatment.]\"} ], \"id\": \"e651\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"66\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.746791839599609\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[No correlation was found between the expression level of TaVP1,  orthologue of ABA insensitive3 (ABI3),  and seed dormancy.]\"} ], \"id\": \"e652\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"249\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"11.145476341247559\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Developing embryos from transgenic wheat grains expressing the Avena fatua Vp1 gene showed enhanced responsiveness to applied abscisic acid compared with the control.,  The maize (Zea mays) Viviparous 1 (Vp1) transcription factor has been shown previously to be a major regulator of seed development,  simultaneously activating embryo maturation and repressing germination.,  Hexaploid bread wheat (Triticum aestivum) caryopses are characterized by relatively weak embryo dormancy and are susceptible to preharvest sprouting (PHS),  a phenomenon that is phenotypically similar to the maize vp1 mutation.]\"} ], \"id\": \"e653\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"250\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"33.73727798461914\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Genetic and molecular studies have shown that the Arabidopsis ABSCISIC ACID-INSENSITIVE3 (ABI3) protein plays a prominent role in the control of seed maturation.,  The ABI3 protein and its orthologues from various other plant species share four domains of high sequence identity,  including three basic domains designated as B1,  B2 and B3.,  A new abi3 allele,  abi3-7,  was generated by mutagenizing abi3-1 seeds.,  Accumulation of AtEm6 protein is more sensitive to abi3-7 mutation than AtEm1.,  The leaky abi3-1 mutation is a single amino acid substitution within the B3 domain.,  The abi3-7 line contains,  in addition to the abi3-1 mutation,  a point mutation that converts residue Ala-458 into Thr within the B2 domain of the ABI3 protein.,  Importance of the B2 domain of the Arabidopsis ABI3 protein for Em and 2S albumin gene regulation.,  This Ala residue is absolutely conserved in all known ABI3 orthologues.,  Abi3-7 seeds display reductions in dormancy and in sensitivity to abscisic acid which are intermediate between those of the leaky abi3-1 and of the severe abi3-4 and abi3-5 mutants.,  These results provide genetic evidence for the importance of the conserved B2 domain for ABI3 function in vivo.  ,  Both At2S1 and At2S2 mRNA are reduced in abi3-7,  but distribution of At2S2 is spatially restricted.]\"} ], \"id\": \"e654\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"246\", \"fromConcept\": \"238\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"16.857280731201172\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Isolation of a VP1 homologue from wheat and analysis of its expression in embryos of dormant and non-dormant cultivars.]\"} ], \"id\": \"e655\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"38\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"105.59747202314975\"} , { \"attrname\": \"PMID\", \"value\": \"31872216\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"105.59747202314975\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Ethylene appeared to regulate the expression of TaEXPA3 and thereby root growth through its control of coleoptile ABA metabolism,  and root ABA signaling via expression of TaABI3 and TaABI5.]\"} ], \"id\": \"e656\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"241\", \"fromConcept\": \"36\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"55.25791852350039\"} , { \"attrname\": \"PMID\", \"value\": \"18506099\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"55.25791852350039\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Viviparous 1 (Vp1) of maize is known to encode a transcription factor VP1 that controls seed germination.]\"} ], \"id\": \"e657\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"34\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"5\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"356.00071479215035\"} , { \"attrname\": \"PMID\", \"value\": \"25211528,  8631935,  12119408,  33249604\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"193.29574575143852\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[In addition,  VP1 has pleiotropic effects on seed development that are not related to ABA.,  The maize (Zea mays) Viviparous 1 (Vp1) transcription factor has been shown previously to be a major regulator of seed development,  simultaneously activating embryo maturation and repressing germination.]\"} ], \"id\": \"e658\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"241\", \"fromConcept\": \"37\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"3\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"723.6122487353346\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"10527428,  25211528,  20448474\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"297.1530552006202\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Genetic and molecular studies have shown that the Arabidopsis ABSCISIC ACID-INSENSITIVE3 (ABI3) protein plays a prominent role in the control of seed maturation.,  The plant-specific transcription factor ABSCISIC ACID INSENSITIVE3 (ABI3) or the maize ortholog VIVIPAROUS1 (VP1) is known to regulate seed maturation and germination in concert with the phytohormone abscisic acid (ABA) but is also evolutionarily conserved among land plants including non-seed plants.]\"} ], \"id\": \"e659\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"241\", \"fromConcept\": \"65\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"5\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"997.6608726137797\"} , { \"attrname\": \"PMID\", \"value\": \"10527428,  25211528,  20448474\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"297.1530552006202\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Genetic and molecular studies have shown that the Arabidopsis ABSCISIC ACID-INSENSITIVE3 (ABI3) protein plays a prominent role in the control of seed maturation.,  The plant-specific transcription factor ABSCISIC ACID INSENSITIVE3 (ABI3) or the maize ortholog VIVIPAROUS1 (VP1) is known to regulate seed maturation and germination in concert with the phytohormone abscisic acid (ABA) but is also evolutionarily conserved among land plants including non-seed plants.]\"} ], \"id\": \"e660\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"243\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"274.4419365357753\"} , { \"attrname\": \"PMID\", \"value\": \"12750793\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"274.4419365357753\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Group 3 chromosomes have received attention as carrying the R genes for seed-coat color and the taVp1 genes that are orthologous to the maize Vp1 gene which encode a dormancy-related transcription factor.]\"} ], \"id\": \"e661\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"33\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"6\"} , { \"attrname\": \"CoSenNum\", \"value\": \"3\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"1717.7599933231922\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"PMID\", \"value\": \"12750793,  25211528,  11413225,  33249604\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"926.380474266829\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[No correlation was found between the expression level of TaVP1,  orthologue of ABA insensitive3 (ABI3),  and seed dormancy.,  The objectives of the present study were to map quantitative trait loci (QTLs) for seed dormancy on chromosome 3A and to investigate an association between taVp1 or R-A1 and the QTLs detected.,  Mapping QTLs for seed dormancy and the Vp1 homologue on chromosome 3A in wheat.]\"} ], \"id\": \"e662\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"247\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.40621280670166\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Thus,  we describe changes in the level of transcripts encoding wheat Viviparous 1 (Vp1) and other interacting proteins.]\"} ], \"id\": \"e663\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"244\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"14.233637809753418\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[ABI3 is a key factor in the activation of seed development and repression of germination in Arabidopsis.,  An ABI3-interacting protein (AIP2) could polyubiquitinate ABI3,  impair seed dormancy and promote seed germination in Arabidopsis.,  Furthermore,  the expression of upstream genes ABI1 and ABI2 were upregulated,  whereas that of downstream genes ABI3 and ABI5 were downregulated in both TaAIP2A and TaAIP2B complemented lines upon ABA treatment.]\"} ], \"id\": \"e664\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"66\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"6.746791839599609\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[No correlation was found between the expression level of TaVP1,  orthologue of ABA insensitive3 (ABI3),  and seed dormancy.]\"} ], \"id\": \"e665\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"249\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"11.145476341247559\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Developing embryos from transgenic wheat grains expressing the Avena fatua Vp1 gene showed enhanced responsiveness to applied abscisic acid compared with the control.,  The maize (Zea mays) Viviparous 1 (Vp1) transcription factor has been shown previously to be a major regulator of seed development,  simultaneously activating embryo maturation and repressing germination.,  Hexaploid bread wheat (Triticum aestivum) caryopses are characterized by relatively weak embryo dormancy and are susceptible to preharvest sprouting (PHS),  a phenomenon that is phenotypically similar to the maize vp1 mutation.]\"} ], \"id\": \"e666\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"248\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"9.415903091430664\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Dormancy retention during imbibition,  however,  is associated with modulations of both ABA level and responsiveness via expression of specific ABA metabolism (TaNCED2 and TaCYP707A1) and signalling (TaPYL2,  TaSnRK2,  TaABI3,  TaABI4 and TaABI5) genes,  and alterations of GA levels and responsiveness through expression of specific GA biosynthesis (TaGA20ox1,  TaGA20ox2 and TaGA3ox2) and signalling (TaGID1 and TaGID2) genes,  respectively.]\"} ], \"id\": \"e667\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"250\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"33.73727798461914\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Genetic and molecular studies have shown that the Arabidopsis ABSCISIC ACID-INSENSITIVE3 (ABI3) protein plays a prominent role in the control of seed maturation.,  The ABI3 protein and its orthologues from various other plant species share four domains of high sequence identity,  including three basic domains designated as B1,  B2 and B3.,  A new abi3 allele,  abi3-7,  was generated by mutagenizing abi3-1 seeds.,  Accumulation of AtEm6 protein is more sensitive to abi3-7 mutation than AtEm1.,  The leaky abi3-1 mutation is a single amino acid substitution within the B3 domain.,  The abi3-7 line contains,  in addition to the abi3-1 mutation,  a point mutation that converts residue Ala-458 into Thr within the B2 domain of the ABI3 protein.,  Importance of the B2 domain of the Arabidopsis ABI3 protein for Em and 2S albumin gene regulation.,  This Ala residue is absolutely conserved in all known ABI3 orthologues.,  Abi3-7 seeds display reductions in dormancy and in sensitivity to abscisic acid which are intermediate between those of the leaky abi3-1 and of the severe abi3-4 and abi3-5 mutants.,  These results provide genetic evidence for the importance of the conserved B2 domain for ABI3 function in vivo.  ,  Both At2S1 and At2S2 mRNA are reduced in abi3-7,  but distribution of At2S2 is spatially restricted.]\"} ], \"id\": \"e668\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"251\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"26.830734252929688\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[The objectives of the present study were to map quantitative trait loci (QTLs) for seed dormancy on chromosome 3A and to investigate an association between taVp1 or R-A1 and the QTLs detected.,  Group 3 chromosomes have received attention as carrying the R genes for seed-coat color and the taVp1 genes that are orthologous to the maize Vp1 gene which encode a dormancy-related transcription factor.,  Although QPhs.ocs-2 was loosely linked to taVp1 by around 50 cM,  they are clearly distinct genes.,  The taVp1 locus was located in the middle of the long arm,  about 85 cM from the centromere.,  Nineteen marker loci,  including taVp1,  were mapped on chromosome 3A.,  Mapping QTLs for seed dormancy and the Vp1 homologue on chromosome 3A in wheat.,  Hence it was concluded that the high dormancy associated with chromosome 3A of Zen is ascribable to QPhs.ocs-1 on the short arm but is not due to the direct contribution of either the taVp1 or R-A1 locus.  ]\"} ], \"id\": \"e669\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"245\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"11.145476341247559\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Hexaploid wheat possesses three Vp1 homoeologues (TaVp1):  TaVp-A1,  TaVp-B1 and TaVp-D1.,  In this study,  we attempted to characterize the molecular properties of TaVp1 in a highly dormant wheat cultivar,  Minamino-komugi (Minamino).,  RT-PCR analyses showed that TaVp1 was highly expressed in Minamino embryos in maturing seeds but much less in roots and leaves of seedlings.,  Viviparous 1 (Vp1) of maize is known to encode a transcription factor VP1 that controls seed germination.,  The level of TaVp1 mRNA was high when the embryos were treated with ABA but markedly decreased in water-imbibed mature embryos whose dormancy had been broken.,  These results suggest that the majority of TaVp1,  especially TaVp-B1,  are properly spliced and may function as a transcription factor playing an important role on dormancy in Minamino.]\"} ], \"id\": \"e670\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"246\", \"fromConcept\": \"241\", \"attributes\": [{ \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"TFIDF\", \"value\": \"16.857280731201172\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Isolation of a VP1 homologue from wheat and analysis of its expression in embryos of dormant and non-dormant cultivars.]\"} ], \"id\": \"e671\", \"contexts\": { } , \"evidences\": [\"Text mining based mapping\"], \"ofType\": \"occurs_in\"} , { \"toConcept\": \"148\", \"fromConcept\": \"242\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"353.9581265834786\"} , { \"attrname\": \"PMID\", \"value\": \"35305221\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"353.9581265834786\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[TaHsfA6b-4D relocalizes intracellularly upon heat stress and play a significant role in linking the heat stress response to unfolded-protein response so as to maintain cellular homeostasis.]\"} ], \"id\": \"e672\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"147\", \"fromConcept\": \"242\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"1\"} , { \"attrname\": \"CoSenNum\", \"value\": \"1\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"283.6644257431326\"} , { \"attrname\": \"PMID\", \"value\": \"35305221\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"283.6644257431326\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[TaHsfA6b-4D relocalizes intracellularly upon heat stress and play a significant role in linking the heat stress response to unfolded-protein response so as to maintain cellular homeostasis.]\"} ], \"id\": \"e673\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"146\", \"fromConcept\": \"242\", \"attributes\": [{ \"attrname\": \"CoCitNum\", \"value\": \"2\"} , { \"attrname\": \"CoSenNum\", \"value\": \"2\"} , { \"attrname\": \"IP_TFIDF\", \"value\": \"388.1865855102769\"} , { \"attrname\": \"PMID\", \"value\": \"35305221,  32945950\"} , { \"attrname\": \"MAX_TFIDF\", \"value\": \"215.3250477162328\"} , { \"attrname\": \"EVIDENCE\", \"value\": \"[Thus,  these studies together suggest that TaHsfA6b-4D may relocalize intracellularly upon heat stress and may play a significant role in linking the unfolded-protein response with heat stress response so as to maintain protein homeostasis inside the cell under heat stress.  ,  TaHsfA6b-4D relocalizes intracellularly upon heat stress and play a significant role in linking the heat stress response to unfolded-protein response so as to maintain cellular homeostasis.]\"} ], \"id\": \"e674\", \"contexts\": { } , \"evidences\": [\"Transitive\"], \"ofType\": \"cooccurs_with\"} , { \"toConcept\": \"63\", \"fromConcept\": \"84\", \"attributes\": [{ \"attrname\": \"percent-identical\", \"value\": \"51.163\"} , { \"attrname\": \"subject-end\", \"value\": \"175.0\"} , { \"attrname\": \"e-value\", \"value\": \"1.84E-57\"} , { \"attrname\": \"alignment-length\", \"value\": \"172.0\"} , { \"attrname\": \"subject-start\", \"value\": \"9.0\"} , { \"attrname\": \"bit-score\", \"value\": \"177.0\"} , { \"attrname\": \"number-mismatch\", \"value\": \"76.0\"} , { \"attrname\": \"number-gap-open\", \"value\": \"3.0\"} , { \"attrname\": \"query-start\", \"value\": \"6.0\"} , { \"attrname\": \"query-end\", \"value\": \"174.0\"} ], \"id\": \"e675\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} , { \"toConcept\": \"60\", \"fromConcept\": \"84\", \"attributes\": [{ \"attrname\": \"percent-identical\", \"value\": \"100.0\"} , { \"attrname\": \"subject-end\", \"value\": \"174.0\"} , { \"attrname\": \"e-value\", \"value\": \"7.53E-128\"} , { \"attrname\": \"alignment-length\", \"value\": \"174.0\"} , { \"attrname\": \"subject-start\", \"value\": \"1.0\"} , { \"attrname\": \"bit-score\", \"value\": \"355.0\"} , { \"attrname\": \"number-mismatch\", \"value\": \"0.0\"} , { \"attrname\": \"number-gap-open\", \"value\": \"0.0\"} , { \"attrname\": \"query-start\", \"value\": \"1.0\"} , { \"attrname\": \"query-end\", \"value\": \"174.0\"} ], \"id\": \"e676\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} , { \"toConcept\": \"64\", \"fromConcept\": \"84\", \"attributes\": [{ \"attrname\": \"percent-identical\", \"value\": \"50.286\"} , { \"attrname\": \"subject-end\", \"value\": \"175.0\"} , { \"attrname\": \"e-value\", \"value\": \"9.96E-56\"} , { \"attrname\": \"alignment-length\", \"value\": \"175.0\"} , { \"attrname\": \"subject-start\", \"value\": \"3.0\"} , { \"attrname\": \"bit-score\", \"value\": \"172.0\"} , { \"attrname\": \"number-mismatch\", \"value\": \"83.0\"} , { \"attrname\": \"number-gap-open\", \"value\": \"3.0\"} , { \"attrname\": \"query-start\", \"value\": \"2.0\"} , { \"attrname\": \"query-end\", \"value\": \"174.0\"} ], \"id\": \"e677\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} , { \"toConcept\": \"56\", \"fromConcept\": \"84\", \"attributes\": [{ \"attrname\": \"percent-identical\", \"value\": \"48.0\"} , { \"attrname\": \"subject-end\", \"value\": \"175.0\"} , { \"attrname\": \"e-value\", \"value\": \"8.83E-53\"} , { \"attrname\": \"alignment-length\", \"value\": \"175.0\"} , { \"attrname\": \"subject-start\", \"value\": \"3.0\"} , { \"attrname\": \"bit-score\", \"value\": \"165.0\"} , { \"attrname\": \"number-mismatch\", \"value\": \"87.0\"} , { \"attrname\": \"number-gap-open\", \"value\": \"3.0\"} , { \"attrname\": \"query-start\", \"value\": \"2.0\"} , { \"attrname\": \"query-end\", \"value\": \"174.0\"} ], \"id\": \"e678\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} , { \"toConcept\": \"62\", \"fromConcept\": \"84\", \"attributes\": [{ \"attrname\": \"percent-identical\", \"value\": \"49.419\"} , { \"attrname\": \"subject-end\", \"value\": \"174.0\"} , { \"attrname\": \"e-value\", \"value\": \"3.63E-54\"} , { \"attrname\": \"alignment-length\", \"value\": \"172.0\"} , { \"attrname\": \"subject-start\", \"value\": \"8.0\"} , { \"attrname\": \"bit-score\", \"value\": \"169.0\"} , { \"attrname\": \"number-mismatch\", \"value\": \"79.0\"} , { \"attrname\": \"number-gap-open\", \"value\": \"3.0\"} , { \"attrname\": \"query-start\", \"value\": \"6.0\"} , { \"attrname\": \"query-end\", \"value\": \"174.0\"} ], \"id\": \"e679\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} , { \"toConcept\": \"61\", \"fromConcept\": \"84\", \"attributes\": [{ \"attrname\": \"percent-identical\", \"value\": \"63.842\"} , { \"attrname\": \"subject-end\", \"value\": \"174.0\"} , { \"attrname\": \"visible\", \"value\": \"true\"} , { \"attrname\": \"size\", \"value\": \"5\"} , { \"attrname\": \"e-value\", \"value\": \"1.4E-79\"} , { \"attrname\": \"alignment-length\", \"value\": \"177.0\"} , { \"attrname\": \"subject-start\", \"value\": \"1.0\"} , { \"attrname\": \"bit-score\", \"value\": \"233.0\"} , { \"attrname\": \"number-mismatch\", \"value\": \"58.0\"} , { \"attrname\": \"number-gap-open\", \"value\": \"2.0\"} , { \"attrname\": \"query-start\", \"value\": \"1.0\"} , { \"attrname\": \"query-end\", \"value\": \"174.0\"} ], \"id\": \"e680\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} , { \"toConcept\": \"57\", \"fromConcept\": \"84\", \"attributes\": [{ \"attrname\": \"percent-identical\", \"value\": \"49.714\"} , { \"attrname\": \"subject-end\", \"value\": \"175.0\"} , { \"attrname\": \"e-value\", \"value\": \"1.98E-54\"} , { \"attrname\": \"alignment-length\", \"value\": \"175.0\"} , { \"attrname\": \"subject-start\", \"value\": \"3.0\"} , { \"attrname\": \"bit-score\", \"value\": \"169.0\"} , { \"attrname\": \"number-mismatch\", \"value\": \"84.0\"} , { \"attrname\": \"number-gap-open\", \"value\": \"3.0\"} , { \"attrname\": \"query-start\", \"value\": \"2.0\"} , { \"attrname\": \"query-end\", \"value\": \"174.0\"} ], \"id\": \"e681\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} , { \"toConcept\": \"59\", \"fromConcept\": \"84\", \"attributes\": [{ \"attrname\": \"percent-identical\", \"value\": \"50.857\"} , { \"attrname\": \"subject-end\", \"value\": \"181.0\"} , { \"attrname\": \"e-value\", \"value\": \"1.19E-53\"} , { \"attrname\": \"alignment-length\", \"value\": \"175.0\"} , { \"attrname\": \"subject-start\", \"value\": \"8.0\"} , { \"attrname\": \"bit-score\", \"value\": \"167.0\"} , { \"attrname\": \"number-mismatch\", \"value\": \"79.0\"} , { \"attrname\": \"number-gap-open\", \"value\": \"4.0\"} , { \"attrname\": \"query-start\", \"value\": \"6.0\"} , { \"attrname\": \"query-end\", \"value\": \"174.0\"} ], \"id\": \"e682\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} , { \"toConcept\": \"58\", \"fromConcept\": \"84\", \"attributes\": [{ \"attrname\": \"percent-identical\", \"value\": \"52.571\"} , { \"attrname\": \"subject-end\", \"value\": \"174.0\"} , { \"attrname\": \"e-value\", \"value\": \"7.18E-57\"} , { \"attrname\": \"alignment-length\", \"value\": \"175.0\"} , { \"attrname\": \"subject-start\", \"value\": \"3.0\"} , { \"attrname\": \"bit-score\", \"value\": \"176.0\"} , { \"attrname\": \"number-mismatch\", \"value\": \"78.0\"} , { \"attrname\": \"number-gap-open\", \"value\": \"3.0\"} , { \"attrname\": \"query-start\", \"value\": \"2.0\"} , { \"attrname\": \"query-end\", \"value\": \"174.0\"} ], \"id\": \"e683\", \"contexts\": { } , \"evidences\": [\"Imported from database\"], \"ofType\": \"has_similar_sequence\"} ], \"version\": \"1.0\"} };"}